(Linear) MAP of: ./Contig017.seq check: 5799 from: 1 to: 811 Fgr.fasta.screen.Contig17 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI NcoI NgoAIV | | | | GAATTCGGCACGAGGAATCACCATGGCTTCTCTCCACCAGTCCCAGCCTGCCGGCACAATCCGCGCAACAACAGTTACAGAGTCCCGAATCACCGCATCA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCTTAGTGGTACCGAAGAGAGGTGGTCAGGGTCGGACGGCCGTGTTAGGCGCGTTGTTGTCAATGTCTCAGGGCTTAGTGGCGTAGT a E F G T R N H H G F S P P V P A C R H N P R N N S Y R V P N H R I R - b N S A R G I T M A S L H Q S Q P A G T I R A T T V T E S R I T A S - c I R H E E S P W L L S T S P S L P A Q S A Q Q Q L Q S P E S P H Q - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I R C S S D G H S R E V L G L R G A C D A C C C N C L G S D G C * - e F E A R P I V M A E R W W D W G A P V I R A V V T V S D R I V A D - f N P V L F * W P K E G G T G A Q R C L G R L L L * L T G F * R M - Tth111I AceIII BsmBI | | | GGACTTTGTCTTGTTCGATCAGCTCCCTAATCGCCATACAACAACATCGCTGCCACACCAGCGTCGTCACTCGTCTCATCTGCAAAACCGTCACCAACAA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CCTGAAACAGAACAAGCTAGTCGAGGGATTAGCGGTATGTTGTTGTAGCGACGGTGTGGTCGCAGCAGTGAGCAGAGTAGACGTTTTGGCAGTGGTTGTT a T L S C S I S S L I A I Q Q H R C H T S V V T R L I C K T V T N N - b G L C L V R S A P * S P Y N N I A A T P A S S L V S S A K P S P T T - c D F V L F D Q L P N R H T T T S L P H Q R R H S S H L Q N R H Q Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S K T K N S * S G L R W V V V D S G C W R R * E D * R C F R * W C - e P S Q R T R D A G * D G Y L L M A A V G A D D S T E D A F G D G V - f L V K D Q E I L E R I A M C C C R Q W V L T T V R R M Q L V T V L L - ApaBI BpmI BfiI BstXI HpaI DrdII | | | | | | CAGCCTGCATCCCCTGCTGTTCAGAATCAGCGAGTAGCCCAGTTGCTCCAGGCTTTTGGTCGTCCTTCGTCTACTGTTAACAACAACCGCCCCACGAACC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTCGGACGTAGGGGACGACAAGTCTTAGTCGCTCATCGGGTCAACGAGGTCCGAAAACCAGCAGGAAGCAGATGACAATTGTTGTTGGCGGGGTGCTTGG a S L H P L L F R I S E * P S C S R L L V V L R L L L T T T A P R T - b A C I P C C S E S A S S P V A P G F W S S F V Y C * Q Q P P H E P - c Q P A S P A V Q N Q R V A Q L L Q A F G R P S S T V N N N R P T N Q - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d C G A D G A T * F * R T A W N S W A K P R G E D V T L L L R G V F - e V A Q M G Q Q E S D A L L G T A G P K Q D D K T * Q * C C G G W S G - f L R C G R S N L I L S Y G L Q E L S K T T R R R S N V V V A G R V - BfiI | AGTTTTACGCTTCTTCGGCCCCTTCGTCATCTACCACATTGAACAAGCAGAACCGTGCTGCTCGACCCCCAGTACCTCTTTTCTCCCAGAGTACAGGTAG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TCAAAATGCGAAGAAGCCGGGGAAGCAGTAGATGGTGTAACTTGTTCGTCTTGGCACGACGAGCTGGGGGTCATGGAGAAAAGAGGGTCTCATGTCCATC a S F T L L R P L R H L P H * T S R T V L L D P Q Y L F S P R V Q V A - b V L R F F G P F V I Y H I E Q A E P C C S T P S T S F L P E Y R * - c F Y A S S A P S S S T T L N K Q N R A A R P P V P L F S Q S T G S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d W N * A E E A G E D D V V N F L C F R A A R G G T G R K E W L V P L - e T K R K K P G K T M * W M S C A S G H Q E V G L V E K R G S Y L Y - f L K V S R R G R R * R G C Q V L L V T S S S G W Y R K E G L T C T - EarI BglI AatII | SfiI PstI | | ApaI | | | | | | CGTCCCGCAACAAACCGCAAAGATGATGAACGCTGCAGACGTCGAACTCGAAGAGTTCACTGCCTTCGAGGGCGGGGCCCACACGGCCTTTTCCTCACCT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GCAGGGCGTTGTTTGGCGTTTCTACTACTTGCGACGTCTGCAGCTTGAGCTTCTCAAGTGACGGAAGCTCCCGCCCCGGGTGTGCCGGAAAAGGAGTGGA a S R N K P Q R * * T L Q T S N S K S S L P S R A G P T R P F P H L - b R P A T N R K D D E R C R R R T R R V H C L R G R G P H G L F L T C - c V P Q Q T A K M M N A A D V E L E E F T A F E G G A H T A F S S P - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d T G C C V A F I I F A A S T S S S S N V A K S P P A W V A K E E G - e R G A V F R L S S S R Q L R R V R L T * Q R R P R P G C P R K R V - f A D R L L G C L H H V S C V D F E F L E S G E L A P G V R G K G * R - BspMI Sse8647I Eco57I BglI Bsu36I | DrdI | | | | | GCTGTTGCCTCAGTCTTTGACTTCAGCAGCAGTGCGTCTAGCTCTATTGCCAACTTGGCGACTATCTCGCCTCAGGACCTTCTTGTCCAAGAACCTTTCA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CGACAACGGAGTCAGAAACTGAAGTCGTCGTCACGCAGATCGAGATAACGGTTGAACCGCTGATAGAGCGGAGTCCTGGAAGAACAGGTTCTTGGAAAGT a L L P Q S L T S A A V R L A L L P T W R L S R L R T F L S K N L S - b C C L S L * L Q Q Q C V * L Y C Q L G D Y L A S G P S C P R T F H - c A V A S V F D F S S S A S S S I A N L A T I S P Q D L L V Q E P F M - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d A T A E T K S K L L L A D L E I A L K A V I E G * S R R T W S G K - e Q Q Q R L R Q S * C C H T * S * Q W S P S * R A E P G E Q G L V K * - f S N G * D K V E A A T R R A R N G V Q R S D R R L V K K D L F R E - BglI BspEI | | TGTCTGCCCCCAACTCGTCAGCCCTCACGGCTTTGACTTCTCCATCCATCTACAACGAGTCTCCGGACTTTGACCAGTATGATGTGTCACCCAACTTTGG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 ACAGACGGGGGTTGAGCAGTCGGGAGTGCCGAAACTGAAGAGGTAGGTAGATGTTGCTCAGAGGCCTGAAACTGGTCATACTACACAGTGGGTTGAAACC a C L P P T R Q P S R L * L L H P S T T S L R T L T S M M C H P T L A - b V C P Q L V S P H G F D F S I H L Q R V S G L * P V * C V T Q L W - c S A P N S S A L T A L T S P S I Y N E S P D F D Q Y D V S P N F G - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d M D A G L E D A R V A K V E G D M * L S D G S K S W Y S T D G L K P - e T Q G W S T L G * P K S K E M W R C R T E P S Q G T H H T V W S Q - f H R G G V R * G E R S Q S R W G D V V L R R V K V L I I H * G V K - BsaI Bpu1102I | PvuII| | SphI DraIII Bpu10I || | | | | || | CATGCCGAGTTTGACGCACCGGGTGGAGAATGGTTTTCTCTGTTCCCTTCGGAAACCCTCGGCTGTCCTCAGCTGAGCGTTGAGACCTCCCCTGAGATGA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GTACGGCTCAAACTGCGTGGCCCACCTCTTACCAAAAGAGACAAGGGAAGCCTTTGGGAGCCGACAGGAGTCGACTCGCAACTCTGGAGGGGACTCTACT a C R V * R T G W R M V F S V P F G N P R L S S A E R * D L P * D E - b H A E F D A P G G E W F S L F P S E T L G C P Q L S V E T S P E M K - c M P S L T H R V E N G F L C S L R K P S A V L S * A L R P P L R * - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d M G L K V C R T S F P K R Q E R R F G E A T R L Q A N L G G R L H - e C A S N S A G P P S H N E R N G E S V R P Q G * S L T S V E G S I - f A H R T Q R V P H L I T K E T G K P F G R S D E A S R Q S R G Q S S - AGTCTGACGAG 801 ---------+- 811 TCAGACTGCTC a V * R - b S D E - c S L T - 801 ---------+- 811 d L R V L - e F D S S - f T Q R - Enzymes that do cut: AatII AceIII ApaI ApaBI BfiI BglI BpmI Bpu10I Bpu1102I BsaI BsmBI BspEI BspMI BssSI BstXI Bsu36I DraIII DrdI DrdII EarI Eco57I EcoRI HpaI NcoI NgoAIV PstI PvuII SfiI SphI Sse8647I Tth111I Enzymes that do not cut: AflII AhdI AlwNI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BclI BglII BplI BsaBI BsaXI BsbI BseRI BsgI BsiWI BsmI BspGI BspLU11I BsrBI BsrDI BsrGI BssHII Bst1107I BstEII ClaI DraI EagI EciI Eco47III EcoNI EcoRV FseI FspI HgiEII HindIII KpnI MfeI MluI MscI NarI NdeI NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I SspI StuI SwaI VspI XbaI XcmI XhoI XmnI