(Linear) MAP of: ./Contig019.seq check: 9935 from: 1 to: 801 Fgr.fasta.screen.Contig19 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI HgiEII KpnI | | | | GAATTCGGCACGAGGATCACTTACACCGTTCCTGTCGATCACACCAACAACGGTACCGCTGTCTACCCTCCCCACACCTACCACCCTGTTCCTTCTGGTG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCTAGTGAATGTGGCAAGGACAGCTAGTGTGGTTGTTGCCATGGCGACAGATGGGAGGGGTGTGGATGGTGGGACAAGGAAGACCAC a E F G T R I T Y T V P V D H T N N G T A V Y P P H T Y H P V P S G G - b N S A R G S L T P F L S I T P T T V P L S T L P T P T T L F L L V - c I R H E D H L H R S C R S H Q Q R Y R C L P S P H L P P C S F W W - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P D S V G N R D I V G V V T G S D V R G V G V V R N R R T - e N P V L I V * V T G T S * V L L P V A T * G G W V * W G T G E P - f I R C S S * K C R E Q R D C W C R Y R Q R G E G C R G G Q E K Q H - BseRI BseRI | BseRI | | BseRI | | | PinAI| | | | BseRI Bsu36I KpnI || | | | | | | GTGCTCACCCTACCGGTGTCGCTCCTCCTCCTCCTCACTCCGGTTCCGAGGGTGGAAAGACTCCTCAGGGCGAGCAACCTAGCAACGATGACGGTACCGA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CACGAGTGGGATGGCCACAGCGAGGAGGAGGAGGAGTGAGGCCAAGGCTCCCACCTTTCTGAGGAGTCCCGCTCGTTGGATCGTTGCTACTGCCATGGCT a A H P T G V A P P P P H S G S E G G K T P Q G E Q P S N D D G T D - b V L T L P V S L L L L L T P V P R V E R L L R A S N L A T M T V P T - c C S P Y R C R S S S S S L R F R G W K D S S G R A T * Q R * R Y R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d T S V R G T D S R R R R V G T G L T S L S R L A L L R A V I V T G - e P A * G V P T A G G G G * E P E S P P F V G * P S C G L L S S P V S - f H E G * R H R E E E E E S R N R P H F S E E P R A V * C R H R Y R - BseRI AceIII | | CAGCGGCAGCAACGGTGGCAGCAAGGGTAGCGACAGCGGAAGCAACGGCGGCAGCTCCTCCGGCTCCGGTTCTGGCTCCGGCTCCGACTCTAGCGAGGAC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTCGCCGTCGTTGCCACCGTCGTTCCCATCGCTGTCGCCTTCGTTGCCGCCGTCGAGGAGGCCGAGGCCAAGACCGAGGCCGAGGCTGAGATCGCTCCTG a S G S N G G S K G S D S G S N G G S S S G S G S G S G S D S S E D - b A A A T V A A R V A T A E A T A A A P P A P V L A P A P T L A R T - c Q R Q Q R W Q Q G * R Q R K Q R R Q L L R L R F W L R L R L * R G P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d V A A A V T A A L T A V A S A V A A A G G A G T R A G A G V R A L V - e L P L L P P L L P L S L P L L P P L E E P E P E P E P E S E L S S - f C R C C R H C C P Y R C R F C R R C S R R S R N Q S R S R S * R P - MscI BssSI Bpu10I BsaI | | | | | CACGAGCCTTCCACCTCTGATGTTCCTGAGCCTGTGACCGCTGGTGCTGGCATGAACGCCGTCACTGGTCTCTTGGCCATTGTCGGTTTCGCTGCTGCCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GTGCTCGGAAGGTGGAGACTACAAGGACTCGGACACTGGCGACCACGACCGTACTTGCGGCAGTGACCAGAGAACCGGTAACAGCCAAAGCGACGACGGA a H E P S T S D V P E P V T A G A G M N A V T G L L A I V G F A A A Y - b T S L P P L M F L S L * P L V L A * T P S L V S W P L S V S L L P - c R A F H L * C S * A C D R W C W H E R R H W S L G H C R F R C C L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d V L R G G R I N R L R H G S T S A H V G D S T E Q G N D T E S S G - e W S G E V E S T G S G T V A P A P M F A T V P R K A M T P K A A A - f G R A K W R Q H E Q A Q S R Q H Q C S R R * Q D R P W Q R N R Q Q R - EarI BspGI EcoNI | VspI BseRI BsaXI | | | | | | ACCTCATCTAAACTGGACCTCTTCTAGGTTGATTGATTAATTGGTCGATCAACTTCACCTCACCTCCTCTTTCTTCAAACATTCTTACGATCCTTACATG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TGGAGTAGATTTGACCTGGAGAAGATCCAACTAACTAATTAACCAGCTAGTTGAAGTGGAGTGGAGGAGAAAGAAGTTTGTAAGAATGCTAGGAATGTAC a L I * T G P L L G * L I N W S I N F T S P P L S S N I L T I L T * - b T S S K L D L F * V D * L I G R S T S P H L L F L Q T F L R S L H D - c P H L N W T S S R L I D * L V D Q L H L T S S F F K H S Y D P Y M - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d V E D L S S R K * T S Q N I P R D V E G * R R K R * V N K R D K C - e * R M * V P G R R P Q N I L Q D I L K V E G G R E E F M R V I R V H - f G * R F Q V E E L N I S * N T S * S * R V E E K K L C E * S G * M - NsiI BsrBI BstEII | | | ATGCATGAAAAGCATAACACTTGGGTATGATTTGGTTTTTGTTCGCAAAAGCGAGCGGCGTTAGTAAATAGGGGGTTATTTTTATTCCGCTTCGGTAACC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TACGTACTTTTCGTATTGTGAACCCATACTAAACCAAAAACAAGCGTTTTCGCTCGCCGCAATCATTTATCCCCCAATAAAAATAAGGCGAAGCCATTGG a C M K S I T L G Y D L V F V R K S E R R * * I G G Y F Y S A S V T - b A * K A * H L G M I W F L F A K A S G V S K * G V I F I P L R * P - c M H E K H N T W V * F G F C S Q K R A A L V N R G L F L F R F G N Q - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S A H F A Y C K P I I Q N K N A F A L P T L L Y P T I K I G S R Y G - e H M F L M V S P Y S K T K T R L L S R R * Y I P P * K * E A E T V - f I C S F C L V Q T H N P K Q E C F R A A N T F L P N N K N R K P L - BsmI NsiI BcgI BcgI | | | AATGTGATTGGGCCAAGCGATGACGGGATTGGGGGGAATGCATTATATGAGAACCGAACGCGATATGCAAACGACTTATATGCTAATTTCTACATTTAAT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TTACACTAACCCGGTTCGCTACTGCCCTAACCCCCCTTACGTAATATACTCTTGGCTTGCGCTATACGTTTGCTGAATATACGATTAAAGATGTAAATTA a N V I G P S D D G I G G N A L Y E N R T R Y A N D L Y A N F Y I * Y - b M * L G Q A M T G L G G M H Y M R T E R D M Q T T Y M L I S T F N - c C D W A K R * R D W G E C I I * E P N A I C K R L I C * F L H L I - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d I H N P W A I V P N P P I C * I L V S R S I C V V * I S I E V N L - e L T I P G L S S P I P P F A N Y S F R V R Y A F S K Y A L K * M * - f W H S Q A L R H R S Q P S H M I H S G F A I H L R S I H * N R C K I - Eco57I EcoNI DraI | | | | ACTTCACACTAGCGACCATTCATTTAGACTAGATTTTGATTTACCTTGCACCTACTGAAGGGTGTACTTTAAAAATATAGACGGAAAAAAAAAAAAAAAA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TGAAGTGTGATCGCTGGTAAGTAAATCTGATCTAAAACTAAATGGAACGTGGATGACTTCCCACATGAAATTTTTATATCTGCCTTTTTTTTTTTTTTTT a F T L A T I H L D * I L I Y L A P T E G C T L K I * T E K K K K K - b T S H * R P F I * T R F * F T L H L L K G V L * K Y R R K K K K K - c L H T S D H S F R L D F D L P C T Y * R V Y F K N I D G K K K K K - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d V E C * R G N M * V L N Q N V K C R S F P T S * F Y L R F F F F F - e Y K V S A V M * K S * I K I * R A G V S P H V K F I Y V S F F F F F - f S * V L S W E N L S S K S K G Q V * Q L T Y K L F I S P F F F F F - A 801 - 801 T a - b - c - 801 - 801 d F - e - f - Enzymes that do cut: AceIII BcgI Bpu10I BsaI BsaXI BseRI BsmI BspGI BsrBI BssSI BstEII Bsu36I DraI EarI Eco57I EcoNI EcoRI HgiEII KpnI MscI NsiI PinAI VspI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BclI BfiI BglI BglII BplI BpmI Bpu1102I BsaBI BsbI BsgI BsiWI BsmBI BspEI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstXI ClaI DraIII DrdI DrdII EagI EciI Eco47III EcoRV FseI FspI HindIII HpaI MfeI MluI NarI NcoI NdeI NgoAIV NheI NotI NruI NspV PacI Pfl1108I PflMI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI XhoI XmnI