(Linear) MAP of: ./Contig020.seq check: 6588 from: 1 to: 833 Fgr.fasta.screen.Contig20 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. AhdI EcoRI BssSI SexAI | BsrBI | | | | | GAATTCGGCACGAGGCTCAAAAGACCTGGTGTCACTCAGCGTCAATTCAACGTCCCACCACGCCGCACCGCTCATCATGTCGCGCTGCCAGGTCGCCATG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGAGTTTTCTGGACCACAGTGAGTCGCAGTTAAGTTGCAGGGTGGTGCGGCGTGGCGAGTAGTACAGCGCGACGGTCCAGCGGTAC a E F G T R L K R P G V T Q R Q F N V P P R R T A H H V A L P G R H E - b N S A R G S K D L V S L S V N S T S H H A A P L I M S R C Q V A M - c I R H E A Q K T W C H S A S I Q R P T T P H R S S C R A A R S P * - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P V L S L L G P T V * R * N L T G G R R V A * * T A S G P R W - e I R C S A * F V Q H * E A D I * R G V V G C R E D H R A A L D G H - f F E A R P E F S R T D S L T L E V D W W A A G S M M D R Q W T A M - PvuII EciI BcgI PstI | | | | AGGCCGATCTCCCGGCAGCTGCGGCCACAGTGTCCCAGAATTGTCCGGCCCTTTACCTCTGCCGCCATCCGCCGAACACCAGCAGCGCGAAACTACTGCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCCGGCTAGAGGGCCGTCGACGCCGGTGTCACAGGGTCTTAACAGGCCGGGAAATGGAGACGGCGGTAGGCGGCTTGTGGTCGTCGCGCTTTGATGACGT a A D L P A A A A T V S Q N C P A L Y L C R H P P N T S S A K L L Q - b R P I S R Q L R P Q C P R I V R P F T S A A I R R T P A A R N Y C S - c G R S P G S C G H S V P E L S G P L P L P P S A E H Q Q R E T T A - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S A S R G A A A A V T D W F Q G A R * R Q R W G G F V L L A F S S C - e P R D G P L Q P W L T G S N D P G K G R G G D A S C W C R S V V A - f L G I E R C S R G C H G L I T R G K V E A A M R R V G A A R F * Q - BspEI BcgI BsbI EcoRI BseRI | MfeI DrdII | | | | | | | GCTACAGCCACCGAAGCAGACCTCGATCCCAACACGGTGCTGCCCGAATTCGAGGAGCAGCTTATGAAGTCCGGAAAGATGCCAATTGGTTCCCGTCGTC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGATGTCGGTGGCTTCGTCTGGAGCTAGGGTTGTGCCACGACGGGCTTAAGCTCCTCGTCGAATACTTCAGGCCTTTCTACGGTTAACCAAGGGCAGCAG a L Q P P K Q T S I P T R C C P N S R S S L * S P E R C Q L V P V V - b Y S H R S R P R S Q H G A A R I R G A A Y E V R K D A N W F P S S - c A T A T E A D L D P N T V L P E F E E Q L M K S G K M P I G S R R R - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S C G G F C V E I G V R H Q G F E L L L K H L G S L H W N T G T T - e A V A V S A S R S G L V T S G S N S S C S I F D P F I G I P E R R - f L * L W R L L G R D W C P A A R I R P A A * S T R F S A L Q N G D D - EarI | GCCGTTTAGCCATCCGCAGCACTGGCGATCTCCCATTCGAGCACCTTCCCTACCAGGCTTTCCAAGAAGCCCGCAAGATCCTGTCAGTGGATCGAGAAGA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CGGCAAATCGGTAGGCGTCGTGACCGCTAGAGGGTAAGCTCGTGGAAGGGATGGTCCGAAAGGTTCTTCGGGCGTTCTAGGACAGTCACCTAGCTCTTCT a A V * P S A A L A I S H S S T F P T R L S K K P A R S C Q W I E K R - b P F S H P Q H W R S P I R A P S L P G F P R S P Q D P V S G S R R - c R L A I R S T G D L P F E H L P Y Q A F Q E A R K I L S V D R E E - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d A T * G D A A S A I E W E L V K G V L S E L F G A L D Q * H I S F - e R R K A M R L V P S R G N S C R G * W A K W S A R L I R D T S R S S - f G N L W G C C Q R D G M R A G E R G P K G L L G C S G T L P D L L - EcoRV BpmI | | | GAAGCTGGGGAAGATTCAAAAGGAGATTGAGAAGATTTCTCGGCTGGAGGCTAAGAAACCGGAGGATATCAAGGGTGGTCAACATATAAAGGATATGAGA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CTTCGACCCCTTCTAAGTTTTCCTCTAACTCTTCTAAAGAGCCGACCTCCGATTCTTTGGCCTCCTATAGTTCCCACCAGTTGTATATTTCCTATACTCT a S W G R F K R R L R R F L G W R L R N R R I S R V V N I * R I * D - b E A G E D S K G D * E D F S A G G * E T G G Y Q G W S T Y K G Y E T - c K L G K I Q K E I E K I S R L E A K K P E D I K G G Q H I K D M R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d L L Q P L N L L L N L L N R P Q L S L F R L I D L T T L M Y L I H S - e F S P F I * F S I S F I E R S S A L F G S S I L P P * C I F S I L - f S A P S S E F P S Q S S K E A P P * S V P P Y * P H D V Y L P Y S - Bce83I Pfl1108I | DrdI | | SacI BseRI Tth111I XmnI | | | | | | | CTGCGGGGTCTACGAAAATACGTCGAGGAGCTCAAGATTCTCGCGGATGCCAATGACCCTGTCGTTAAGAAGCGTTTCGAGGACGGAACGGGCGATATGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GACGCCCCAGATGCTTTTATGCAGCTCCTCGAGTTCTAAGAGCGCCTACGGTTACTGGGACAGCAATTCTTCGCAAAGCTCCTGCCTTGCCCGCTATACT a C G V Y E N T S R S S R F S R M P M T L S L R S V S R T E R A I * - b A G S T K I R R G A Q D S R G C Q * P C R * E A F R G R N G R Y E - c L R G L R K Y V E E L K I L A D A N D P V V K K R F E D G T G D M N - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d Q P T * S F V D L L E L N E R I G I V R D N L L T E L V S R A I H - e S R P R R F Y T S S S L I R A S A L S G T T L F R K S S P V P S I - f V A P D V F I R R P A * S E R P H W H G Q R * S A N R P R F P R Y S - ACAAGCCTATTTACCGTCACTATGCCGAAGCCAAGTGGCGCTCATACGACCAGCGACTTATCAACCAACGTATTCACCAGTTCAGCATCGTTCCTGATGT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TGTTCGGATAAATGGCAGTGATACGGCTTCGGTTCACCGCGAGTATGCTGGTCGCTGAATAGTTGGTTGCATAAGTGGTCAAGTCGTAGCAAGGACTACA a T S L F T V T M P K P S G A H T T S D L S T N V F T S S A S F L M C - b Q A Y L P S L C R S Q V A L I R P A T Y Q P T Y S P V Q H R S * C - c K P I Y R H Y A E A K W R S Y D Q R L I N Q R I H Q F S I V P D V - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d V L R N V T V I G F G L P A * V V L S K D V L T N V L E A D N R I - e F L G I * R * * A S A L H R E Y S W R S I L W R I * W N L M T G S T - f C A * K G D S H R L W T A S M R G A V * * G V Y E G T * C R E Q H - BpmI BspGI| EciI SalI DrdI || | | | GCTTCCCAAGCTGGAGCCCACTGCCGATGTCCAGCTATATTTCCGCCAACTAAAGGTTCCCCCCGGTCAAATCGTCGACAGTATCGTCAGCGAAAAAGCT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CGAAGGGTTCGACCTCGGGTGACGGCTACAGGTCGATATAAAGGCGGTTGATTTCCAAGGGGGGCCAGTTTAGCAGCTGTCATAGCAGTCGCTTTTTCGA a F P S W S P L P M S S Y I S A N * R F P P V K S S T V S S A K K L - b A S Q A G A H C R C P A I F P P T K G S P R S N R R Q Y R Q R K S S - c L P K L E P T A D V Q L Y F R Q L K V P P G Q I V D S I V S E K A - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d H K G L Q L G S G I D L * I E A L * L N G G T L D D V T D D A F F S - e S G L S S G V A S T W S Y K R W S F T G G P * I T S L I T L S F A - f A E W A P A W Q R H G A I N G G V L P E G R D F R R C Y R * R F L - CCCCGTCTGCGCGTGCAAGTCTTTGACAAGGCG 801 ---------+---------+---------+--- 833 GGGGCAGACGCGCACGTTCAGAAACTGTTCCGC a P V C A C K S L T R - b P S A R A S L * Q G - c P R L R V Q V F D K A - 801 ---------+---------+---------+--- 833 d G T Q A H L D K V L R - e G R R R T C T K S L A - f E G D A R A L R Q C P - Enzymes that do cut: AhdI Bce83I BcgI BpmI BsbI BseRI BspEI BspGI BsrBI BssSI DrdI DrdII EarI EciI EcoRI EcoRV MfeI Pfl1108I PstI PvuII SacI SalI SexAI Tth111I XmnI Enzymes that do not cut: AatII AceIII AflII AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BclI BfiI BglI BglII BplI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsgI BsiWI BsmI BsmBI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII EagI Eco47III Eco57I EcoNI FseI FspI HgiEII HindIII HpaI KpnI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacII SanDI SapI ScaI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XcmI XhoI