(Linear) MAP of: ./Contig022.seq check: 5789 from: 1 to: 854 Fgr.fasta.screen.Contig22 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. SanDI EcoRI BssSI Bpu10I ScaI Tth111I | | | | | | | GAATTCGGCACGAGGCGGTGGCTACCCTCAGCAGCAGTACTATCCCCAGCAGTCTCAGGGTGGCTACCCCGGACAGGGTCCCCCTATGGGCTACGGTGCT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGCCACCGATGGGAGTCGTCGTCATGATAGGGGTCGTCAGAGTCCCACCGATGGGGCCTGTCCCAGGGGGATACCCGATGCCACGA a E F G T R R W L P S A A V L S P A V S G W L P R T G S P Y G L R C S - b N S A R G G G Y P Q Q Q Y Y P Q Q S Q G G Y P G Q G P P M G Y G A - c I R H E A V A T L S S S T I P S S L R V A T P D R V P L W A T V L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P V L R H S G E A A T S D G A T E P H S G R V P D G * P S R H - e I R C S A T A V R L L L V I G L L R L T A V G S L T G R H A V T S - f F E A R P P P * G * C C Y * G W C D * P P * G P C P G G I P * P A - MscI BglI | | CAACCTCATTATGGCGGCGGTGGTTACGGCGCACCTGGCGGCTATGGTGGATATGGAGGCGGCCCCGGTTATGGCCAACCTGGCGGCGGCTTCGGCGGTG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTTGGAGTAATACCGCCGCCACCAATGCCGCGTGGACCGCCGATACCACCTATACCTCCGCCGGGGCCAATACCGGTTGGACCGCCGCCGAAGCCGCCAC a T S L W R R W L R R T W R L W W I W R R P R L W P T W R R L R R W - b Q P H Y G G G G Y G A P G G Y G G Y G G G P G Y G Q P G G G F G G G - c N L I M A A V V T A H L A A M V D M E A A P V M A N L A A A S A V - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d E V E N H R R H N R R V Q R S H H I H L R G R N H G V Q R R S R R H - e L R M I A A T T V A C R A A I T S I S A A G T I A L R A A A E A T - f * G * * P P P P * P A G P P * P P Y P P P G P * P W G P P P K P P - AlwNI RcaI | | GTGGTATGGGAGGTGGCCGCAAACCGGGAGGTGGAGGCATGGGCATGGCATGAGGCGCTTCTCTCAGTGCCTGTTCAGGTCTGCTCCGCGCGACCATACT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CACCATACCCTCCACCGGCGTTTGGCCCTCCACCTCCGTACCCGTACCGTACTCCGCGAAGAGAGTCACGGACAAGTCCAGACGAGGCGCGCTGGTATGA a W Y G R W P Q T G R W R H G H G M R R F S Q C L F R S A P R D H T - b G M G G G R K P G G G G M G M A * G A S L S A C S G L L R A T I L - c V V W E V A A N R E V E A W A W H E A L L S V P V Q V C S A R P Y S - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d H Y P L H G C V P L H L C P C P M L R K E * H R N L D A G R S W V - e T T H S T A A F R S T S A H A H C S A S R E T G T * T Q E A R G Y - f P P I P P P R L G P P P P M P M A H P A E R L A Q E P R S R A V M S - BsmBI EciI AatII | BfiI | | | | | CATGACCTCATCCAAAAATGATGATCCTGACGTCTCTATGCACTGACCTTACGACTGGGCGGATTTTTACCGACGAGACTCAACAAAAAATCACGCTGGT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GTACTGGAGTAGGTTTTTACTACTAGGACTGCAGAGATACGTGACTGGAATGCTGACCCGCCTAAAAATGGCTGCTCTGAGTTGTTTTTTAGTGCGACCA a H D L I Q K * * S * R L Y A L T L R L G G F L P T R L N K K S R W S - b M T S S K N D D P D V S M H * P Y D W A D F Y R R D S T K N H A G - c * P H P K M M I L T S L C T D L T T G R I F T D E T Q Q K I T L V - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d * S R M W F H H D Q R R * A S V K R S P P N K G V L S L L F D R Q - e E H G * G F I I I R V D R H V S R V V P R I K V S S V * C F I V S T - f M V E D L F S S G S T E I C Q G * S Q A S K * R R S E V F F * A P - SanDI | CTTGTCATAACCGGGGCCGTCCTCGTTTTCCCCCTTGGAATCGAGTGGGGCCGCTACACCGTCTGACTATTGGAGTGAAACACCGTTGCCCATTGGGGGA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GAACAGTATTGGCCCCGGCAGGAGCAAAAGGGGGAACCTTAGCTCACCCCGGCGATGTGGCAGACTGATAACCTCACTTTGTGGCAACGGGTAACCCCCT a C H N R G R P R F P P W N R V G P L H R L T I G V K H R C P L G D - b L V I T G A V L V F P L G I E W G R Y T V * L L E * N T V A H W G T - c L S * P G P S S F S P L E S S G A A T P S D Y W S E T P L P I G G - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d D Q * L R P R G R K G G Q F R T P G S C R R V I P T F C R Q G N P S - e K D Y G P G D E N E G K S D L P A A V G D S * Q L S V G N G M P P - f R T M V P A T R T K G R P I S H P R * V T Q S N S H F V T A W Q P - KpnI AhdI SmaI DrdII BssHII | | | | | CCCTGTTCCGGGTACCCCCCCTGCAACTGCTGGGGATAGGACTGATGGTCCTCTGGCGCAATTCCTTGCACCCCGGGGAACCACTTTTTTTAGAACGGCG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GGGACAAGGCCCATGGGGGGGACGTTGACGACCCCTATCCTGACTACCAGGAGACCGCGTTAAGGAACGTGGGGCCCCTTGGTGAAAAAAATCTTGCCGC a P V P G T P P A T A G D R T D G P L A Q F L A P R G T T F F R T A - b L F R V P P L Q L L G I G L M V L W R N S L H P G E P L F L E R R - c P C S G Y P P C N C W G * D * W S S G A I P C T P G N H F F * N G A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d G T G P V G G A V A P S L V S P G R A C N R A G R P V V K K L V A - e G Q E P Y G G Q L Q Q P Y S Q H D E P A I G Q V G P F W K K * F P - f V R N R T G G R C S S P I P S I T R Q R L E K C G P S G S K K S R R - EcoRI AceIII EciI | | | | CGCACCGGGGGGGGAGCCCCAACTTTTGTTTCCTTTAAGGGAGGGTTAATTTTCGAGCTGGGCGGAATTCTGGGCCTTGGCTGTTTTCCGTGGAAAATGT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCGTGGCCCCCCCCTCGGGGTTGAAAACAAAGGAAATTCCCTCCCAATTAAAAGCTCGACCCGCCTTAAGACCCGGAACCGACAAAAGGCACCTTTTACA a R T G G G A P T F V S F K G G L I F E L G G I L G L G C F P W K M L - b A P G G E P Q L L F P L R E G * F S S W A E F W A L A V F R G K C - c H R G G S P N F C F L * G R V N F R A G R N S G P W L F S V E N V - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R V P P P A G V K T E K L P P N I K S S P P I R P R P Q K G H F I - e A C R P P L G L K Q K R * P L T L K R A P R F E P G Q S N E T S F T - f A G P P S G W S K N G K L S P * N E L Q A S N Q A K A T K R P F H - BsbI HpaI NarI BseRI | | | | TATCCCCTTAAAATTCCCAACACATACAACCCCGGAGCCTAAAGGGTTAACCCTGGGGGCGCCATTGAGGAGCCCCCTCCCTTAATTTGGCTTGGCCTCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 ATAGGGGAATTTTAAGGGTTGTGTATGTTGGGGCCTCGGATTTCCCAATTGGGACCCCCGCGGTAACTCCTCGGGGGAGGGAATTAAACCGAACCGGAGG a S P * N S Q H I Q P R S L K G * P W G R H * G A P S L N L A W P P - b Y P L K I P N T Y N P G A * R V N P G G A I E E P P P L I W L G L L - c I P L K F P T H T T P E P K G L T L G A P L R S P L P * F G L A S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d N D G * F E W C M C G R L R F P * G Q P R W Q P A G E R L K A Q G G - e I G K F N G V C V V G S G L P N V R P A G N L L G R G * N P K A E - f * G R L I G L V Y L G P A * L T L G P P A M S S G G G K I Q S P R - NcoI | TTGCCCCTTTTCCATGGGAAACTGTTGTGCCCACTGACTATAAAAATTCGCCAA 801 ---------+---------+---------+---------+---------+---- 854 AACGGGGAAAAGGTACCCTTTGACAACACGGGTGACTGATATTTTTAAGCGGTT a C P F S M G N C C A H * L * K F A - b A P F P W E T V V P T D Y K N S P - c L P L F H G K L L C P L T I K I R Q - 801 ---------+---------+---------+---------+---------+---- 854 d Q G K E M P F Q Q A W Q S Y F N A L - e K G R K W P F S N H G S V I F I R W - f R A G K G H S V T T G V S * L F E G - Enzymes that do cut: AatII AceIII AhdI AlwNI BfiI BglI Bpu10I BsbI BseRI BsmBI BssHII BssSI DrdII EciI EcoRI HpaI KpnI MscI NarI NcoI RcaI SanDI ScaI SmaI Tth111I Enzymes that do not cut: AflII ApaI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BclI BglII BplI BpmI Bpu1102I BsaI BsaBI BsaXI BsgI BsiWI BsmI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI EagI EarI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII MfeI MluI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RsrII SacI SacII SalI SapI SexAI SfiI SgfI SgrAI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XcmI XhoI XmnI