(Linear) MAP of: ./Contig023.seq check: 7327 from: 1 to: 827 Fgr.fasta.screen.Contig23 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI EcoRI BcgI BsbI RcaI ScaI | | | | | | | GAATTCGGCACGAGGATCGAATTCAGATCAGATCACCGAATCCCAATCAACTCGCTACCAGTCAAGCAGCTATCAACACCACCAACCGACATCATGAAGT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCTAGCTTAAGTCTAGTCTAGTGGCTTAGGGTTAGTTGAGCGATGGTCAGTTCGTCGATAGTTGTGGTGGTTGGCTGTAGTACTTCA a E F G T R I E F R S D H R I P I N S L P V K Q L S T P P T D I M K Y - b N S A R G S N S D Q I T E S Q S T R Y Q S S S Y Q H H Q P T S * S - c I R H E D R I Q I R S P N P N Q L A T S Q A A I N T T N R H H E V - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P V L I S N L D S * R I G I L E S G T L C S D V G G V S M M F - e I R C S S R I * I L D G F G L * S A V L * A A I L V V L R C * S T - f F E A R P D F E S * I V S D W D V R * W D L L * * C W W G V D H L - BseRI Bpu10I BfiI EarI XhoI | | | | | ACTCCGCTGTCGCCCTCCTCGCTGCCCTCACTGCCTACGCTCAGGCCCAGTCCATCGACCTTCCTGACCCCTCTTCCGTCATTGGTGACATCTCTACTCG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TGAGGCGACAGCGGGAGGAGCGACGGGAGTGACGGATGCGAGTCCGGGTCAGGTAGCTGGAAGGACTGGGGAGAAGGCAGTAACCACTGTAGAGATGAGC a S A V A L L A A L T A Y A Q A Q S I D L P D P S S V I G D I S T R - b T P L S P S S L P S L P T L R P S P S T F L T P L P S L V T S L L E - c L R C R P P R C P H C L R S G P V H R P S * P L F R H W * H L Y S - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d Y E A T A R R A A R V A * A * A W D M S R G S G E E T M P S M E V R - e S R Q R G G R Q G * Q R R E P G T W R G E Q G R K R * Q H C R * E - f V G S D G E E S G E S G V S L G L G D V K R V G R G D N T V D R S - BsaXI Bpu10I Tth111I | EarI | BseRI | | Tth111I BsaI | | | | | | | | | AGTTGAAGGTGCTTCCTCTATCATCGACGAAGTCTCCTCTGCCGTCCGGGATGCCTCTACCCGAATTGAGGACGAGGTCTCTTCTCGCCTGAGCGATGCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TCAACTTCCACGAAGGAGATAGTAGCTGCTTCAGAGGAGACGGCAGGCCCTACGGAGATGGGCTTAACTCCTGCTCCAGAGAAGAGCGGACTCGCTACGG a V E G A S S I I D E V S S A V R D A S T R I E D E V S S R L S D A - b L K V L P L S S T K S P L P S G M P L P E L R T R S L L A * A M P - c S * R C F L Y H R R S L L C R P G C L Y P N * G R G L F S P E R C L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d T S P A E E I M S S T E E A T R S A E V R I S S S T E E R R L S A - e L Q L H K R * * R R L R R Q R G P H R * G F Q P R P R K E G S R H - f S N F T S G R D D V F D G R G D P I G R G S N L V L D R R A Q A I G - DrdI SgrAI MluI| BsaI BamHI BamHI | || | | | TCCACTGCTGTCGCCGGTGCCACCACCACTTTGACCGACGCGTCTACTGTCACTGAGTCTGCTGAGACCGGAAGCGAGACTGGATCCGAGACTGGATCCG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AGGTGACGACAGCGGCCACGGTGGTGGTGAAACTGGCTGCGCAGATGACAGTGACTCAGACGACTCTGGCCTTCGCTCTGACCTAGGCTCTGACCTAGGC a S T A V A G A T T T L T D A S T V T E S A E T G S E T G S E T G S D - b P L L S P V P P P L * P T R L L S L S L L R P E A R L D P R L D P - c H C C R R C H H H F D R R V Y C H * V C * D R K R D W I R D W I R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d E V A T A P A V V V K V S A D V T V S D A S V P L S V P D S V P D - e R W Q Q R R H W W W K S R R T * Q * Q T Q Q S R F R S Q I R S Q I R - f G S S D G T G G G S Q G V R R S D S L R S L G S A L S S G L S S G - Bce83I AceIII EarI BsaI BamHI SalI BcgI | StuI BcgI SapI | | | | | | | | ACACTGAGACTGGATCTGACACCGAGACCGGATCCAAGACCGTCGACACCAGCTCTCTCAAGAGTGTTACCGAGGCCTTTGCCAGTGCCTCCGAGTCTGT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TGTGACTCTGACCTAGACTGTGGCTCTGGCCTAGGTTCTGGCAGCTGTGGTCGAGAGAGTTCTCACAATGGCTCCGGAAACGGTCACGGAGGCTCAGACA a T E T G S D T E T G S K T V D T S S L K S V T E A F A S A S E S V - b T L R L D L T P R P D P R P S T P A L S R V L P R P L P V P P S L S - c H * D W I * H R D R I Q D R R H Q L S Q E C Y R G L C Q C L R V C - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S V S V P D S V S V P D L V T S V L E R L L T V S A K A L A E S D T - e C Q S Q I Q C R S R I W S R R C W S E * S H * R P R Q W H R R T Q - f V S L S S R V G L G S G L G D V G A R E L T N G L G K G T G G L R - BseRI BspGI BplI Bpu10I AceIII SgrAI |NheI Bpu10I | | | | | | | | CCAGGAAGAGCTTGACTCCCTCAGCTCCGTTGCCGCCACTGCCACCGGCGCTGCTAGCTCCTCCATCGCTGACCAGATCGCTGAGGCCACATCCAAGATT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GGTCCTTCTCGAACTGAGGGAGTCGAGGCAACGGCGGTGACGGTGGCCGCGACGATCGAGGAGGTAGCGACTGGTCTAGCGACTCCGGTGTAGGTTCTAA a Q E E L D S L S S V A A T A T G A A S S S I A D Q I A E A T S K I - b R K S L T P S A P L P P L P P A L L A P P S L T R S L R P H P R L - c P G R A * L P Q L R C R H C H R R C * L L H R * P D R * G H I Q D W - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d W S S S S E R L E T A A V A V P A A L E E M A S W I A S A V D L I - e G P L A Q S G * S R Q R W Q W R R Q * S R W R Q G S R Q P W M W S - f D L F L K V G E A G N G G S G G A S S A G G D S V L D S L G C G L N - GGTGCCATTGGCAACAGTGCCAGTGCCGCTGTCAGCAGTGCTACTGATGACAACGCTGGTGCCATGCCCACCGCTGCTGTCGCTATGGGTGCTCTCATGG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CCACGGTAACCGTTGTCACGGTCACGGCGACAGTCGTCACGATGACTACTGTTGCGACCACGGTACGGGTGGCGACGACAGCGATACCCACGAGAGTACC a G A I G N S A S A A V S S A T D D N A G A M P T A A V A M G A L M G - b V P L A T V P V P L S A V L L M T T L V P C P P L L S L W V L S W - c C H W Q Q C Q C R C Q Q C Y * * Q R W C H A H R C C R Y G C S H G - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P A M P L L A L A A T L L A V S S L A P A M G V A A T A I P A R M - e Q H W Q C C H W H R Q * C H * Q H C R Q H W A W R Q Q R * P H E * P - f T G N A V T G T G S D A T S S I V V S T G H G G S S D S H T S E H - BsgI BspLU11I | VspI | | | GCGGTGCAGCTATCTTTGTCAACATGTAAAATGGGTTTTGTGCGATATGACAGGATACACAGCAATTAATGAAACGGACTTGACATTATTATTTTGAACT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CGCCACGTCGATAGAAACAGTTGTACATTTTACCCAAAACACGCTATACTGTCCTATGTGTCGTTAATTACTTTGCCTGAACTGTAATAATAAAACTTGA a G A A I F V N M * N G F C A I * Q D T Q Q L M K R T * H Y Y F E L - b A V Q L S L S T C K M G F V R Y D R I H S N * * N G L D I I I L N S - c R C S Y L C Q H V K W V L C D M T G Y T A I N E T D L T L L F * T - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d P P A A I K T L M Y F P N Q A I H C S V C C N I F R V Q C * * K S S - e R H L * R Q * C T F H T K H S I V P Y V A I L S V S K V N N N Q V - f A T C S D K D V H L I P K T R Y S L I C L L * H F P S S M I I K F - CTGACCTCTCGGGCTTCGGTCGTTTAT 801 ---------+---------+------- 827 GACTGGAGAGCCCGAAGCCAGCAAATA a * P L G L R S F - b D L S G F G R L - c L T S R A S V V Y - 801 ---------+---------+------- 827 d Q G R P S R D N I - e R V E R A E T T * - f E S R E P K P R K - Enzymes that do cut: AceIII BamHI Bce83I BcgI BfiI BplI Bpu10I BsaI BsaXI BsbI BseRI BsgI BspGI BspLU11I BssSI DrdI EarI EcoRI MluI NheI RcaI SalI SapI ScaI SgrAI StuI Tth111I VspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI BclI BglI BglII BpmI Bpu1102I BsaBI BsiWI BsmI BsmBI BspEI BspMI BsrBI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdII EagI EciI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MscI NarI NcoI NdeI NgoAIV NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RsrII SacI SacII SanDI SexAI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI SwaI XbaI XcmI XmnI