(Linear) MAP of: ./Contig024.seq check: 919 from: 1 to: 834 Fgr.fasta.screen.Contig24 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. BglI EcoRI BssSI NgoAIV| BseRI MluI BbsI EarI | | || | | | | GAATTCGGCACGAGGGAGAAGCCGACATCAGCCCAGCCGGCGCTGGAATCTCCGGCATCTCCTCACGCGTTTTCTACTCCGTCTTCTGACTCTTCTACTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCCTCTTCGGCTGTAGTCGGGTCGGCCGCGACCTTAGAGGCCGTAGAGGAGTGCGCAAAAGATGAGGCAGAAGACTGAGAAGATGAG a E F G T R E K P T S A Q P A L E S P A S P H A F S T P S S D S S T P - b N S A R G R S R H Q P S R R W N L R H L L T R F L L R L L T L L L - c I R H E G E A D I S P A G A G I S G I S S R V F Y S V F * L F Y S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P L L R C * G L R R Q F R R C R R V R K R S R R R V R R S - e N P V L S F G V D A W G A S S D G A D G * A N E V G D E S E E V - f I R C S P S A S M L G A P A P I E P M E E R T K * E T K Q S K * E - BpmI EarI XcmI BsrDI BsaXI BsgI BpmI | | | | | | | CTGCCTCTGCCTCTTCCACTCCAGCCACAGCAGCAATGGCAAAGACATTTCCTCCTGTGCAGCCTGGAGGCAGTTTAATCCTCGCATGGCAAATCAAGCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GACGGAGACGGAGAAGGTGAGGTCGGTGTCGTCGTTACCGTTTCTGTAAAGGAGGACACGTCGGACCTCCGTCAAATTAGGAGCGTACCGTTTAGTTCGT a A S A S S T P A T A A M A K T F P P V Q P G G S L I L A W Q I K H - b L P L P L P L Q P Q Q Q W Q R H F L L C S L E A V * S S H G K S S T - c C L C L F H S S H S S N G K D I S S C A A W R Q F N P R M A N Q A - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R G R G R G S W G C C C H C L C K R R H L R S A T * D E C P L D L - e G A E A E E V G A V A A I A F V N G G T C G P P L K I R A H C I L C - f Q R Q R K W E L W L L L P L S M E E Q A A Q L C N L G R M A F * A - BamHI DrdI | | CAAGAAGGTGCTTGTTGTCGGCGGTGGTGAGGTTGCCGCTGGTCGGATCCTCAACTGCCTCAACGCCGACGCCAATGTCACTGTCGTGTGCCCCAAGTCT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTTCTTCCACGAACAACAGCCGCCACCACTCCAACGGCGACCAGCCTAGGAGTTGACGGAGTTGCGGCTGCGGTTACAGTGACAGCACACGGGGTTCAGA a K K V L V V G G G E V A A G R I L N C L N A D A N V T V V C P K S - b R R C L L S A V V R L P L V G S S T A S T P T P M S L S C A P S L - c Q E G A C C R R W * G C R W S D P Q L P Q R R R Q C H C R V P Q V W - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d V L L H K N D A T T L N G S T P D E V A E V G V G I D S D H A G L R - e L F T S T T P P P S T A A P R I R L Q R L A S A L T V T T H G L D - f C S P A Q Q R R H H P Q R Q D S G * S G * R R R W H * Q R T G W T - PvuI BglII BcgI Eco57I BcgI ClaI | BcgI | BsaXI XcmI | | | | | | | | | | GGCCTGAACCCTGAAGTCGCCTTCCGAGTTAGCGAAGGTCAAGTCGCGCATATCGATCGAGTATTCGAGCCCGAAGATCTGGATGGAGCCAGGGTGGTCC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCGGACTTGGGACTTCAGCGGAAGGCTCAATCGCTTCCAGTTCAGCGCGTATAGCTAGCTCATAAGCTCGGGCTTCTAGACCTACCTCGGTCCCACCAGG a G L N P E V A F R V S E G Q V A H I D R V F E P E D L D G A R V V L - b A * T L K S P S E L A K V K S R I S I E Y S S P K I W M E P G W S - c P E P * S R L P S * R R S S R A Y R S S I R A R R S G W S Q G G P - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d A Q V R F D G E S N A F T L D R M D I S Y E L G F I Q I S G P H D - e P R F G S T A K R T L S P * T A C I S R T N S G S S R S P A L T T - f Q G S G Q L R R G L * R L D L R A Y R D L I R A R L D P H L W P P G - ClaI BcgI HindIII SspI BspEI BsmI | | | | | | TGGTCGCAATCGATGATCCTGCCGCCTCGACCGTCATCTGGAAGCTTTGCAAGGAGCGAAAGGTCCCTGCCAATATTGCCGACGTGCCTCCGGAATGCGA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACCAGCGTTAGCTACTAGGACGGCGGAGCTGGCAGTAGACCTTCGAAACGTTCCTCGCTTTCCAGGGACGGTTATAACGGCTGCACGGAGGCCTTACGCT a V A I D D P A A S T V I W K L C K E R K V P A N I A D V P P E C D - b W S Q S M I L P P R P S S G S F A R S E R S L P I L P T C L R N A I - c G R N R * S C R L D R H L E A L Q G A K G P C Q Y C R R A S G M R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d Q D C D I I R G G R G D D P L K A L L S L D R G I N G V H R R F A - e R T A I S S G A A E V T M Q F S Q L S R F T G A L I A S T G G S H S - f P R L R H D Q R R S R * R S A K C P A F P G Q W Y Q R R A E P I R - BstXI NruI | | | TTTCTATTTTGGTAGCATCCATCGCGATGGTCCTCTACAGATCATGGTCAGCACCAACAGCAAGGGGCCAAGGTTGGCGGCTGCTATTCGGCAGTTTATT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AAAGATAAAACCATCGTAGGTAGCGCTACCAGGAGATGTCTAGTACCAGTCGTGGTTGTCGTTCCCCGGTTCCAACCGCCGACGATAAGCCGTCAAATAA a F Y F G S I H R D G P L Q I M V S T N S K G P R L A A A I R Q F I - b S I L V A S I A M V L Y R S W S A P T A R G Q G W R L L F G S L L - c F L F W * H P S R W S S T D H G Q H Q Q Q G A K V G G C Y S A V Y C - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d I E I K T A D M A I T R * L D H D A G V A L P W P Q R S S N P L K N - e K * K P L M W R S P G R C I M T L V L L L P G L N A A A I R C N I - f N R N Q Y C G D R H D E V S * P * C W C C P A L T P P Q * E A T * - AceIII BsmI BsmBI | XcmI | | | | GCCAAGCAACTGCCGAAGAATGCCGGGAACGCTATCGAGACGATTGGGGAGCTGCGGCTCACATTAAAGAAGATGGCTCCCCAACCTGAAGATGGACCCC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CGGTTCGTTGACGGCTTCTTACGGCCCTTGCGATAGCTCTGCTAACCCCTCGACGCCGAGTGTAATTTCTTCTACCGAGGGGTTGGACTTCTACCTGGGG a A K Q L P K N A G N A I E T I G E L R L T L K K M A P Q P E D G P Q - b P S N C R R M P G T L S R R L G S C G S H * R R W L P N L K M D P - c Q A T A E E C R E R Y R D D W G A A A H I K E D G S P T * R W T P - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d G L L Q R L I G P V S D L R N P L Q P E C * L L H S G L R F I S G - e A L C S G F F A P F A I S V I P S S R S V N F F I A G W G S S P G - f Q W A V A S S H R S R * R S S Q P A A A * M L S S P E G V Q L H V G - BbsI SphI BspGI Eco57I| AflII BspEI BseRI | || | | | | AGCGCATGCTCTGGGATGTCCAAAGTGGCGATACCTCTTAAGTGGGACGAAATGTGCGGGCCTTCCGGAGAAGACTGGACCACCTCCTCCTTTTTACCCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TCGCGTACGAGACCCTACAGGTTTCACCGCTATGGAGAATTCACCCTGCTTTACACGCCCGGAAGGCCTCTTCTGACCTGGTGGAGGAGGAAAAATGGGG a R M L W D V Q S G D T S * V G R N V R A F R R R L D H L L L F T P - b S A C S G M S K V A I P L K W D E M C G P S G E D W T T S S F L P P - c A H A L G C P K W R Y L L S G T K C A G L P E K T G P P P P F Y P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d L A H E P I D L T A I G R L H S S I H P G E P S S Q V V E E K K G - e W R M S Q S T W L P S V E * T P R F T R A K R L L S S W R R R K V G - f A C A R P H G F H R Y R K L P V F H A P R G S F V P G G G G K * G - CCGTAACAATCCCCTCTAGGGATGTGAAACAGCA 801 ---------+---------+---------+---- 834 GGCATTGTTAGGGGAGATCCCTACACTTTGTCGT a R N N P L * G C E T A - b V T I P S R D V K Q - c P * Q S P L G M * N S - 801 ---------+---------+---------+---- 834 d G T V I G E L S T F C C - e R L L G R * P H S V A - f G Y C D G R P I H F L - Enzymes that do cut: AceIII AflII BamHI BbsI BcgI BglI BglII BpmI BsaXI BseRI BsgI BsmI BsmBI BspEI BspGI BsrDI BssSI BstXI ClaI DrdI EarI Eco57I EcoRI HindIII MluI NgoAIV NruI PvuI SphI SspI XcmI Enzymes that do not cut: AatII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII Bce83I BclI BfiI BplI Bpu10I Bpu1102I BsaI BsaBI BsbI BsiWI BspLU11I BspMI BsrBI BsrGI BssHII Bst1107I BstEII Bsu36I DraI DraIII DrdII EagI EciI Eco47III EcoNI EcoRV FseI FspI HgiEII HpaI KpnI MfeI MscI NarI NcoI NdeI NheI NotI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I Sse8647I StuI SwaI Tth111I VspI XbaI XhoI XmnI