(Linear) MAP of: ./Contig025.seq check: 6859 from: 1 to: 861 Fgr.fasta.screen.Contig25 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI PflMI DrdI SalI | | | | | GAATTCGGCACGAGGCCGAGTCCGGCGGTCTTGACAGTGGCCTGAACTTCATCCCCACTCTCTGGTCTGACGATGCCGTCCACGTCGACCGCTTCGCCTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGGCTCAGGCCGCCAGAACTGTCACCGGACTTGAAGTAGGGGTGAGAGACCAGACTGCTACGGCAGGTGCAGCTGGCGAAGCGGAG a E F G T R P S P A V L T V A * T S S P L S G L T M P S T S T A S P P - b N S A R G R V R R S * Q W P E L H P H S L V * R C R P R R P L R L - c I R H E A E S G G L D S G L N F I P T L W S D D A V H V D R F A S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P R T R R D Q C H G S S * G W E R T Q R H R G R R G S R R - e N P V L G L G A T K V T A Q V E D G S E P R V I G D V D V A E G - f I R C S A S D P P R S L P R F K M G V R Q D S S A T W T S R K A E - NarI MscI Bsu36I | | | CAACTGCGCTAAGTCCCTTGCCAACGGCGCCAAGGCCATCTTCTCCTTCAACGAGCCCGACAACGGTGGCCAGGCTCACATGACCCCTGAGGCCGCTGCC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTTGACGCGATTCAGGGAACGGTTGCCGCGGTTCCGGTAGAAGAGGAAGTTGCTCGGGCTGTTGCCACCGGTCCGAGTGTACTGGGGACTCCGGCGACGG a T A L S P L P T A P R P S S P S T S P T T V A R L T * P L R P L P - b Q L R * V P C Q R R Q G H L L L Q R A R Q R W P G S H D P * G R C R - c N C A K S L A N G A K A I F S F N E P D N G G Q A H M T P E A A A - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d W S R * T G Q W R R W P W R R R * R A R C R H G P E C S G Q P R Q - e G V A S L G K G V A G L G D E G E V L G V V T A L S V H G R L G S G - f L Q A L D R A L P A L A M K E K L S G S L P P W A * M V G S A A A - BsaI NruI BplI | | | GCTGCTCACATCAAGTATCTCAACCCTTACGCTGGCAAGGCCCTCATTGGTGCTCCTTCCATCAGCAACAGTGGTCTCGCTGGGGAGGGTCGCGAGTGGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGACGAGTGTAGTTCATAGAGTTGGGAATGCGACCGTTCCGGGAGTAACCACGAGGAAGGTAGTCGTTGTCACCAGAGCGACCCCTCCCAGCGCTCACCG a L L T S S I S T L T L A R P S L V L L P S A T V V S L G R V A S G - b C S H Q V S Q P L R W Q G P H W C S F H Q Q Q W S R W G G S R V A - c A A H I K Y L N P Y A G K A L I G A P S I S N S G L A G E G R E W L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d R Q E C * T D * G K R Q C P G * Q H E K W * C C H D R Q P P D R T A - e S S V D L I E V R V S A L G E N T S R G D A V T T E S P L T A L P - f A A * M L Y R L G * A P L A R M P A G E M L L L P R A P S P R S H - StuI BsaXI BsaI EarI | | | | TCTCCGCTTTCGTCGAGGCCTGTGGTGACAAGTGCCACTTCGATTTCTGCAACATCCACTGGTACTCCGAGGTTGAGTACGGTGAGACCCTCTTCGAGCA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AGAGGCGAAAGCAGCTCCGGACACCACTGTTCACGGTGAAGCTAAAGACGTTGTAGGTGACCATGAGGCTCCAACTCATGCCACTCTGGGAGAAGCTCGT a S P L S S R P V V T S A T S I S A T S T G T P R L S T V R P S S S T - b L R F R R G L W * Q V P L R F L Q H P L V L R G * V R * D P L R A - c S A F V E A C G D K C H F D F C N I H W Y S E V E Y G E T L F E H - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R R K R R P R H H C T G S R N R C C G S T S R P Q T R H S G R R A - e E G S E D L G T T V L A V E I E A V D V P V G L N L V T L G E E L - f S E A K T S A Q P S L H W K S K Q L M W Q Y E S T S Y P S V R K S C - BcgI BsaI | BplI BglII BglI BcgI BsrDI XhoI | | | | | | | | CATCGAGAAGTCCTCCGAGATCTGTGGTGGCAAGCCCATCTGGCTCACCGAGTTCGCCCCCAAGGGCTCTGACGACGCCATTGCTTCTTGGCTCGAGGAG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GTAGCTCTTCAGGAGGCTCTAGACACCACCGTTCGGGTAGACCGAGTGGCTCAAGCGGGGGTTCCCGAGACTGCTGCGGTAACGAAGAACCGAGCTCCTC a S R S P P R S V V A S P S G S P S S P P R A L T T P L L L G S R R - b H R E V L R D L W W Q A H L A H R V R P Q G L * R R H C F L A R G D - c I E K S S E I C G G K P I W L T E F A P K G S D D A I A S W L E E - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d C R S T R R S R H H C A W R A * R T R G W P S Q R R W Q K K A R P - e V D L L G G L D T T A L G D P E G L E G G L A R V V G N S R P E L L - f M S F D E S I Q P P L G M Q S V S N A G L P E S S A M A E Q S S S - BspGI BseRI Bce83I RcaI DrdI | | | | | | ACCATCCCTCGTCTTGAGGCTCTCGACACCCTTGATGCTTACTCCTACTTCAAGGTCGAGACTGGTATGCTCATGACCACCGAGACTGAGATGTCCAGCT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TGGTAGGGAGCAGAACTCCGAGAGCTGTGGGAACTACGAATGAGGATGAAGTTCCAGCTCTGACCATACGAGTACTGGTGGCTCTGACTCTACAGGTCGA a P S L V L R L S T P L M L T P T S R S R L V C S * P P R L R C P A - b H P S S * G S R H P * C L L L L Q G R D W Y A H D H R D * D V Q L - c T I P R L E A L D T L D A Y S Y F K V E T G M L M T T E T E M S S Y - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S W G E D Q P E R C G Q H K S R S * P R S Q Y A * S W R S Q S T W S - e G D R T K L S E V G K I S V G V E L D L S T H E H G G L S L H G A - f V M G R R S A R S V R S A * E * K L T S V P I S M V V S V S I D L - HindIII NgoAIV AflII | HindIII EagI | BsrGI | | | | | | ACGGTAGCGTCTACGCCTCCGCTTAAGCTTCTCAAAGCTTGACGGCCGGCGATGCCACCAGTTCTTTTTAACATTTCTTGTACACTCGCTATGGGAATAC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TGCCATCGCAGATGCGGAGGCGAATTCGAAGAGTTTCGAACTGCCGGCCGCTACGGTGGTCAAGAAAAATTGTAAAGAACATGTGAGCGATACCCTTATG a T V A S T P P L K L L K A * R P A M P P V L F N I S C T L A M G I P - b R * R L R L R L S F S K L D G R R C H Q F F L T F L V H S L W E Y - c G S V Y A S A * A S Q S L T A G D A T S S F * H F L Y T R Y G N T - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R Y R R R R R K L K E F S S P R R H W W N K K V N R T C E S H S Y - e V T A D V G G S L S R L A Q R G A I G G T R K L M E Q V S A I P I - f * P L T * A E A * A E * L K V A P S A V L E K * C K K Y V R * P F V - EarI NarI BsrGI BstEII | | | | CCAACAACTGTTCAAATTGGCTTTTTTTATCGGGAAGAGGGGATGATAGATTTTCATGGCGCCCGTTGACTTCTGTACATATTCTGCATCTAGGTGACCT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GGTTGTTGACAAGTTTAACCGAAAAAAATAGCCCTTCTCCCCTACTATCTAAAAGTACCGCGGGCAACTGAAGACATGTATAAGACGTAGATCCACTGGA a N N C S N W L F L S G R G D D R F S W R P L T S V H I L H L G D L - b P T T V Q I G F F Y R E E G M I D F H G A R * L L Y I F C I * V T W - c Q Q L F K L A F F I G K R G * * I F M A P V D F C T Y S A S R * P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d G V V T * I P K K * R S S P I I S K * P A R Q S R Y M N Q M * T V - e G L L Q E F Q S K K D P L P S S L N E H R G N V E T C I R C R P S R - f W C S N L N A K K I P F L P H Y I K M A G T S K Q V Y E A D L H G - BfiI | GGATCTGGCTTTTTACACACCGTTTAACCCAGTGTCCCCCCATTTATTCTATAACGGCATA 801 ---------+---------+---------+---------+---------+---------+- 861 CCTAGACCGAAAAATGTGTGGCAAATTGGGTCACAGGGGGGTAAATAAGATATTGCCGTAT a D L A F Y T P F N P V S P H L F Y N G I - b I W L F T H R L T Q C P P I Y S I T A - c G S G F L H T V * P S V P P F I L * R H - 801 ---------+---------+---------+---------+---------+---------+- 861 d Q I Q S K V C R K V W H G G M * E I V A Y - e S R A K * V G N L G T D G W K N * L P M - f P D P K K C V T * G L T G G N I R Y R C - Enzymes that do cut: AflII Bce83I BcgI BfiI BglI BglII BplI BsaI BsaXI BseRI BspGI BsrDI BsrGI BssSI BstEII Bsu36I DrdI EagI EarI EcoRI HindIII MscI NarI NgoAIV NruI PflMI RcaI SalI StuI XhoI Enzymes that do not cut: AatII AceIII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BclI BpmI Bpu10I Bpu1102I BsaBI BsbI BsgI BsiWI BsmI BsmBI BspEI BspLU11I BspMI BsrBI BssHII Bst1107I BstXI ClaI DraI DraIII DrdII EciI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HpaI KpnI MfeI MluI NcoI NdeI NheI NotI NsiI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RsrII SacI SacII SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI SwaI Tth111I VspI XbaI XcmI XmnI