(Linear) MAP of: ./Contig077.seq check: 7128 from: 1 to: 822 Fgr.fasta.screen.Contig77 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. TTCTAAGAACGTGAACGGTTCCCGAAACCCGCCACAAATTCATGGCTGCTTCCCACTCCAAAAAAGCCCAGGATCTTAGGCGGGCGTCCCCCCCCGCGCC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AAGATTCTTGCACTTGCCAAGGGCTTTGGGCGGTGTTTAAGTACCGACGAAGGGTGAGGTTTTTTCGGGTCCTAGAATCCGCCCGCAGGGGGGGGCGCGG a F * E R E R F P K P A T N S W L L P T P K K P R I L G G R P P P R Q - b S K N V N G S R N P P Q I H G C F P L Q K S P G S * A G V P P R A - c L R T * T V P E T R H K F M A A S H S K K A Q D L R R A S P P A P - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d E L F T F P E R F G G C I * P Q K G S W F L G P D * A P T G G R A - e * S R S R N G F G A V F E H S S G V G F F G L I K P P R G G G R - f R L V H V T G S V R W L N M A A E W E L F A W S R L R A D G G A G - BglI NgoAIV NgoAIV| NheI | BseRI || | | | AGGGAACACTCCCGAGGCAGACCGATCAGCCCTGCCGGCCTCCGCACGCCATGAAGTACGCCTAGACGCTAGCCGGCAAGAGGGAGACATACAAGGCCAT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCCCTTGTGAGGGCTCCGTCTGGCTAGTCGGGACGGCCGGAGGCGTGCGGTACTTCATGCGGATCTGCGATCGGCCGTTCTCCCTCTGTATGTTCCGGTA a G T L P R Q T D Q P C R P P H A M K Y A * T L A G K R E T Y K A I - b R E H S R G R P I S P A G L R T P * S T P R R * P A R G R H T R P S - c G N T P E A D R S A L P A S A R H E V R L D A S R Q E G D I Q G H - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d L S C E R P L G I L G A P R R V G H L V G L R * G A L P L C V L G - e W P V S G L C V S * G Q R G G C A M F Y A * V S A P L L S V Y L A M - f P F V G S A S R D A R G A E A R W S T R R S A L R C S P S M C P W - PflMI BsbI Bce83I | | | CGCCTGGCTCCTCAACACTGGTGGGGTCGGTCCCGGTTTCGCCCAGGCCGACAAGCGATGCCCCCTCAAGTACACCTGTGCCATCCTCGACGCCATCCAC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GCGGACCGAGGAGTTGTGACCACCCCAGCCAGGGCCAAAGCGGGTCCGGCTGTTCGCTACGGGGGAGTTCATGTGGACACGGTAGGAGCTGCGGTAGGTG a A W L L N T G G V G P G F A Q A D K R C P L K Y T C A I L D A I H - b P G S S T L V G S V P V S P R P T S D A P S S T P V P S S T P S T - c R L A P Q H W W G R S R F R P G R Q A M P P Q V H L C H P R R H P L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d D G P E E V S T P D T G T E G L G V L S A G E L V G T G D E V G D V - e A Q S R L V P P T P G P K A W A S L R H G R L Y V Q A M R S A M W - f R R A G * C Q H P R D R N R G P R C A I G G * T C R H W G R R W G - BpmI BstEII Psp1406I BbsI| Eco57I Psp1406I | | || | | TCTGGTGACCTCGCCAACGTTGAGTACGAGAATTACGGTGTCTTCAACCTCCAGGTCCCCAAGTCCTGCCCCAACGTTCCTTCAGAACTTCTCAACCCCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AGACCACTGGAGCGGTTGCAACTCATGCTCTTAATGCCACAGAAGTTGGAGGTCCAGGGGTTCAGGACGGGGTTGCAAGGAAGTCTTGAAGAGTTGGGGA a S G D L A N V E Y E N Y G V F N L Q V P K S C P N V P S E L L N P S - b L V T S P T L S T R I T V S S T S R S P S P A P T F L Q N F S T P - c W * P R Q R * V R E L R C L Q P P G P Q V L P Q R S F R T S Q P L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R T V E G V N L V L I V T D E V E L D G L G A G V N R * F K E V G - e E P S R A L T S Y S F * P T K L R W T G L D Q G L T G E S S R L G - f S Q H G R W R Q T R S N R H R * G G P G W T R G W R E K L V E * G R - BspGI PflMI | EarI StuI| | BsbI SapI || | | | CCAAGGCCTGGACCGCTGGTGAGGACAGCTTCAACACTGAGGTTGTCAAGCTCGGCAAGCTCTTCCGCGAGAACTTCGCCAAGTACGAGAGCGAGGCCAC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGTTCCGGACCTGGCGACCACTCCTGTCGAAGTTGTGACTCCAACAGTTCGAGCCGTTCGAGAAGGCGCTCTTGAAGCGGTTCATGCTCTCGCTCCGGTG a K A W T A G E D S F N T E V V K L G K L F R E N F A K Y E S E A T - b P R P G P L V R T A S T L R L S S S A S S S A R T S P S T R A R P P - c Q G L D R W * G Q L Q H * G C Q A R Q A L P R E L R Q V R E R G H - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d G L G P G S T L V A E V S L N D L E A L E E A L V E G L V L A L G - e E L A Q V A P S S L K L V S T T L S P L S K R S F K A L Y S L S A V - f W P R S R Q H P C S * C Q P Q * A R C A R G R S S R W T R S R P W - FseI NgoAIV | | | CGAAGATGTCGTCAAGGCCGGCCCCGTTGTCTAAGGAAAAGGATAAGAAGGAAAAACAAAAGGGAAAGCGATCTTTTTTTGTGATGAATTTGAGCAACTG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCTTCTACAGCAGTTCCGGCCGGGGCAACAGATTCCTTTTCCTATTCTTCCTTTTTGTTTTCCCTTTCGCTAGAAAAAAACACTACTTAAACTCGTTGAC a E D V V K A G P V V * G K G * E G K T K G K A I F F C D E F E Q L - b K M S S R P A P L S K E K D K K E K Q K G K R S F F V M N L S N C - c R R C R Q G R P R C L R K R I R R K N K R E S D L F L * * I * A T V - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d G F I D D L G A G N D L S F S L F S F C F P F R D K K T I F K L L Q - e S S T T L A P G T T * P F P Y S P F V F P F A I K K Q S S N S C S - f R L H R * P R G R Q R L F L I L L F F L L S L S R K K H H I Q A V - TTTACCATTTGGGTCCGGCGTCATTACATGGCGGCCATCAACCGGCTGCCCTCTTTTTTATATATCTGAAAGGGTTTTCTTTTACATGGCATGAGATTGT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AAATGGTAAACCCAGGCCGCAGTAATGTACCGCCGGTAGTTGGCCGACGGGAGAAAAAATATATAGACTTTCCCAAAAGAAAATGTACCGTACTCTAACA a F T I W V R R H Y M A A I N R L P S F L Y I * K G F L L H G M R L Y - b L P F G S G V I T W R P S T G C P L F Y I S E R V F F Y M A * D C - c Y H L G P A S L H G G H Q P A A L F F I Y L K G F S F T W H E I V - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d K G N P D P T M V H R G D V P Q G R K * I D S L T K K * M A H S Q - e N V M Q T R R * * M A A M L R S G E K K Y I Q F P K R K C P M L N - f T * W K P G A D N C P P W * G A A R K K I Y R F P N E K V H C S I T - XbaI SpeI | | ATGTGATGTAAGCATGAATAGCTTTACGATTCTGCAATAGAAAGCGTATATCTTCTAAAAAAAACAAAAAAAAAAAAAAAAAAACTCTAGACTAGTTCTC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TACACTACATTCGTACTTATCGAAATGCTAAGACGTTATCTTTCGCATATAGAAGATTTTTTTTGTTTTTTTTTTTTTTTTTTTGAGATCTGATCAAGAG a V M * A * I A L R F C N R K R I S S K K N K K K K K K T L D * F S - b M * C K H E * L Y D S A I E S V Y L L K K T K K K K K K L * T S S L - c C D V S M N S F T I L Q * K A Y I F * K K Q K K K K K N S R L V L - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d I H H L C S Y S * S E A I S L T Y R R F F V F F F F F F S * V L E - e Y T I Y A H I A K R N Q L L F R I D E L F F L F F F F F V R S * N E - f H S T L M F L K V I R C Y F A Y I K * F F C F F F F F F E L S T R - BssSI EcoRI | | TNTCTNCCCTCGTGCCGAATTC 801 ---------+---------+-- 822 ANAGANGGGAGCACGGCTTAAG a ? ? P R A E F - b S ? L V P N - c ? L P S C R I - 801 ---------+---------+-- 822 d R ? ? R T G F E - e ? ? G R A S N - f ? R G E H R I - Enzymes that do cut: BbsI Bce83I BglI BpmI BsbI BseRI BspGI BssSI BstEII EarI Eco57I EcoRI FseI NgoAIV NheI PflMI Psp1406I SapI SpeI StuI XbaI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BcgI BclI BfiI BglII BplI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsgI BsiWI BsmI BsmBI BspEI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII Bst1107I BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI EciI Eco47III EcoNI EcoRV FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NotI NruI NsiI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SphI SrfI Sse8387I Sse8647I SspI SwaI Tth111I VspI XcmI XhoI XmnI