(Linear) MAP of: ./Contig094.seq check: 9378 from: 1 to: 828 Fgr.fasta.screen.Contig94 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI BplI EciI | | | | GAATTCGGCACGAGGAACACTCAATACATCTACCTATACCACTTCTACCTATAACCACAAATCAAAATGTCCGCCAACGATTATTACGGCAACTCTAACA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCTTGTGAGTTATGTAGATGGATATGGTGAAGATGGATATTGGTGTTTAGTTTTACAGGCGGTTGCTAATAATGCCGTTGAGATTGT a E F G T R N T Q Y I Y L Y H F Y L * P Q I K M S A N D Y Y G N S N S - b N S A R G T L N T S T Y T T S T Y N H K S K C P P T I I T A T L T - c I R H E E H S I H L P I P L L P I T T N Q N V R Q R L L R Q L * Q - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P V S L V D V * V V E V * L W L D F H G G V I I V A V R V - e N P V L F V * Y M * R Y W K * R Y G C I L I D A L S * * P L E L - f I R C S S C E I C R G I G S R G I V V F * F T R W R N N R C S * C - BstEII MscI BstXI | Bpu10I MscI BstXI ScaI | | | | | | | GCGGCTATGGCCAGCAGGGTGGTTACCCTCAGCAGCAAAGCTATGGCCAGCCTCAATACGGCCAACAGAGTGGCTATCCTCAACAGCAGCAGTACTCTCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGCCGATACCGGTCGTCCCACCAATGGGAGTCGTCGTTTCGATACCGGTCGGAGTTATGCCGGTTGTCTCACCGATAGGAGTTGTCGTCGTCATGAGAGT a G Y G Q Q G G Y P Q Q Q S Y G Q P Q Y G Q Q S G Y P Q Q Q Q Y S Q - b A A M A S R V V T L S S K A M A S L N T A N R V A I L N S S S T L S - c R L W P A G W L P S A A K L W P A S I R P T E W L S S T A A V L S - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d A A I A L L T T V R L L L A I A L R L V A L L T A I R L L L L V R - e L P * P W C P P * G * C C L * P W G * Y P W C L P * G * C C C Y E * - f R S H G A P H N G E A A F S H G A E I R G V S H S D E V A A T S E - ScaI EarI BsaXI | | | GCCACAGTACTCTCAGCATCAACAACCTCAGAGCTACGGGGGCTATAACCAACAGCAACCTCAATACTCTTCTCACAACCAACAGCCCAGCTACAACTCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGGTGTCATGAGAGTCGTAGTTGTTGGAGTCTCGATGCCCCCGATATTGGTTGTCGTTGGAGTTATGAGAAGAGTGTTGGTTGTCGGGTCGATGTTGAGG a P Q Y S Q H Q Q P Q S Y G G Y N Q Q Q P Q Y S S H N Q Q P S Y N S - b H S T L S I N N L R A T G A I T N S N L N T L L T T N S P A T T P - c A T V L S A S T T S E L R G L * P T A T S I L F S Q P T A Q L Q L P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d L W L V R L M L L R L A V P A I V L L L R L V R R V V L L G A V V G - e G C Y E * C * C G * L * P P * L W C C G * Y E E * L W C G L * L E - f A V T S E A D V V E S S R P S Y G V A V E I S K E C G V A W S C S - Bpu10I | CACTCCCCCGTACCTCAGCAGGGCTACGGCCAGCAGCACGGCTCATCGCCTTACCCTCCCCAGCACCAGGACAACTCTCAGCACGGTGCTCCCGCTTATC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GTGAGGGGGCATGGAGTCGTCCCGATGCCGGTCGTCGTGCCGAGTAGCGGAATGGGAGGGGTCGTGGTCCTGTTGAGAGTCGTGCCACGAGGGCGAATAG a H S P V P Q Q G Y G Q Q H G S S P Y P P Q H Q D N S Q H G A P A Y P - b T P P Y L S R A T A S S T A H R L T L P S T R T T L S T V L P L I - c L P R T S A G L R P A A R L I A L P S P A P G Q L S A R C S R L S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d V G G Y R L L A V A L L V A * R R V R G L V L V V R L V T S G S I - e W E G T G * C P * P W C C P E D G * G G W C W S L E * C P A G A * - f G S G R V E A P S R G A A R S M A K G E G A G P C S E A R H E R K D - BglI BpmI XcmI MscI SfiI BglI | | | | | CCCAGCAAGGCGGCGCTCCAGGCCAGTACCCTCCTGGCCAACCCGGCCCCGACGGCGAACGAAGTCTGGGTGCTACACTCGCCGGAAGTGGTGCGGCTGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGGTCGTTCCGCCGCGAGGTCCGGTCATGGGAGGACCGGTTGGGCCGGGGCTGCCGCTTGCTTCAGACCCACGATGTGAGCGGCCTTCACCACGCCGACC a Q Q G G A P G Q Y P P G Q P G P D G E R S L G A T L A G S G A A G - b P S K A A L Q A S T L L A N P A P T A N E V W V L H S P E V V R L G - c P A R R R S R P V P S W P T R P R R R T K S G C Y T R R K W C G W - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d G L L A A S W A L V R R A L G A G V A F S T Q T S C E G S T T R S - e G W C P P A G P W Y G G P W G P G S P S R L R P A V S A P L P A A P - f G A L R R E L G T G E Q G V R G R R R V F D P H * V R R F H H P Q - BstXI XhoI XmnI | | | GTGGGCTGCCCACACCGCTGGAAGTGGCCTTCTCGGTAGTCTTGGTGCTGCGGCGGCTGGTGCTATTGGTGCCAATCTTCTCGAGAACAAGTTCAAGAAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CACCCGACGGGTGTGGCGACCTTCACCGGAAGAGCCATCAGAACCACGACGCCGCCGACCACGATAACCACGGTTAGAAGAGCTCTTGTTCAAGTTCTTC a W A A H T A G S G L L G S L G A A A A G A I G A N L L E N K F K K - b G L P T P L E V A F S V V L V L R R L V L L V P I F S R T S S R R - c V G C P H R W K W P S R * S W C C G G W C Y W C Q S S R E Q V Q E E - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P P S G V G S S T A K E T T K T S R R S T S N T G I K E L V L E L L - e H A A W V A P L P R R P L R P A A A A P A I P A L R R S F L N L F - f T P Q G C R Q F H G E R Y D Q H Q P P Q H * Q H W D E R S C T * S - Pfl1108I | AACAAGAAAAACAAGAAGGATAAGAAGCACAAGAAGCGAGGTATCAACGGTAGCTCTAGCAGCAGCAGTGACTCAGACTAAGTAGCTACGATAACGATGG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TTGTTCTTTTTGTTCTTCCTATTCTTCGTGTTCTTCGCTCCATAGTTGCCATCGAGATCGTCGTCGTCACTGAGTCTGATTCATCGATGCTATTGCTACC a N K K N K K D K K H K K R G I N G S S S S S S D S D * V A T I T M G - b T R K T R R I R S T R S E V S T V A L A A A V T Q T K * L R * R W - c Q E K Q E G * E A Q E A R Y Q R * L * Q Q Q * L R L S S Y D N D G - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d V L F V L L I L L V L L S T D V T A R A A A T V * V L Y S R Y R H - e F L F F L F S L F C L F R P I L P L E L L L L S E S * T A V I V I - f S C S F C S P Y S A C S A L Y * R Y S * C C C H S L S L L * S L S P - GTATGGCGTTTGGGAGTGTTAGCATTATATTCCTTAAACTTTGATGATAGCAAATGAATGTTTTATTTTATTTTATAAAAAAAAAAAAAAAAACATTAAG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CATACCGCAAACCCTCACAATCGTAATATAAGGAATTTGAAACTACTATCGTTTACTTACAAAATAAAATAAAATATTTTTTTTTTTTTTTTTGTAATTC a M A F G S V S I I F L K L * * * Q M N V L F Y F I K K K K K T L R - b V W R L G V L A L Y S L N F D D S K * M F Y F I L * K K K K K H * G - c Y G V W E C * H Y I P * T L M I A N E C F I L F Y K K K K K N I K - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d T H R K P T N A N Y E K F K S S L L H I N * K I K Y F F F F F C * - e P I A N P L T L M I N R L S Q H Y C I F T K N * K I F F F F F V N L - f Y P T Q S H * C * I G * V K I I A F S H K I K N * L F F F F F M L - ApaI | GGGGGGCCCCGGACCCCAATTCACCTTT 801 ---------+---------+-------- 828 CCCCCCGGGGCCTGGGGTTAAGTGGAAA a G G P G P Q F T F - b G A P D P N S P - c G G P R T P I H L - 801 ---------+---------+-------- 828 d P P A G S G L E G K - e P P G P G W N V K - f P P G R V G I * R - Enzymes that do cut: ApaI BglI BplI BpmI Bpu10I BsaXI BssSI BstEII BstXI EarI EciI EcoRI MscI Pfl1108I ScaI SfiI XcmI XhoI XmnI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BclI BfiI BglII Bpu1102I BsaI BsaBI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII Bst1107I Bsu36I ClaI DraI DraIII DrdI DrdII EagI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI SapI SexAI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI