(Linear) MAP of: ./Contig202.seq check: 4482 from: 1 to: 1180 Contig202 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. XhoI | cccctcgagtttttttttttttttttccgtaatgagtaagtagtattcaaagaCCCAGATATACTTAGAAAATATACATTCATATTCTTGACAATCATTA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 ggggagctcaaaaaaaaaaaaaaaaaggcattactcattcatcataagtttctGGGTCTATATGAATCTTTTATATGTAAGTATAAGAACTGTTAGTAAT a P L E F F F F F F R N E * V V F K D P D I L R K Y T F I F L T I I N - b P S S F F F F F S V M S K * Y S K T Q I Y L E N I H S Y S * Q S L - c P R V F F F F F P * * V S S I Q R P R Y T * K I Y I H I L D N H * - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d G R T K K K K K G Y H T L L I * L G L Y V * F I Y M * I R S L * * - e G E L K K K K K E T I L L Y Y E F V W I Y K S F I C E Y E Q C D N - f R S N K K K K K R L S Y T T N L S G S I S L F Y V N M N K V I M - ACAAAACAAATGAAATCGCGTCAGCGTCGTTGAAATCGTGTCATCGTCTTATATACGGCGTTCCATCATTTTCCATCTCATCATCATCATTCACTACCAC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TGTTTTGTTTACTTTAGCGCAGTCGCAGCAACTTTAGCACAGTAGCAGAATATATGCCGCAAGGTAGTAAAAGGTAGAGTAGTAGTAGTAAGTGATGGTG a K T N E I A S A S L K S C H R L I Y G V P S F S I S S S S F T T T - b T K Q M K S R Q R R * N R V I V L Y T A F H H F P S H H H H S L P Q - c Q N K * N R V S V V E I V S S S Y I R R S I I F H L I I I I H Y H - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d C F L H F R T L T T S I T D D D * I R R E M M K W R M M M M * * W - e V F C I F D R * R R Q F R T M T K Y V A N W * K G D * * * * E S G - f L L V F S I A D A D N F D H * R R I Y P T G D N E M E D D D N V V V - Bce83I BbsI SalI DrdI BsgI | | | | | AACAGAACCCTCCATCGCCATCCCTCAAGGGTCTTCATGTCCTTGTCGTCGACATCGGGGTCGCCGTGCTCGATTCTTGAAGCGAGCTTCTTGAGTCGCT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TTGTCTTGGGAGGTAGCGGTAGGGAGTTCCCAGAAGTACAGGAACAGCAGCTGTAGCCCCAGCGGCACGAGCTAAGAACTTCGCTCGAAGAACTCAGCGA a T E P S I A I P Q G S S C P C R R H R G R R A R F L K R A S * V A - b Q N P P S P S L K G L H V L V V D I G V A V L D S * S E L L E S L - c N R T L H R H P S R V F M S L S S T S G S P C S I L E A S F L S R F - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d L L V R W R W G E L T K M D K D D V D P D G H E I R S A L K K L R - e C C F G G D G D R L P R * T R T T S M P T A T S S E Q L S S R S D S - f V S G E M A M G * P D E H G Q R R C R P R R A R N K F R A E Q T A - Bce83I BssSI BglI | | | TCTGCACAGTTCGGGCGACCCGGATCGACACCTCGTTGGAAAACACAAACAGCACGGCAAACACGAGAAAGGCCAGCTTGGCAAAGCGACCTTTGCCGAG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AGACGTGTCAAGCCCGCTGGGCCTAGCTGTGGAGCAACCTTTTGTGTTTGTCGTGCCGTTTGTGCTCTTTCCGGTCGAACCGTTTCGCTGGAAACGGCTC a S A Q F G R P G S T P R W K T Q T A R Q T R E R P A W Q S D L C R V - b L H S S G D P D R H L V G K H K Q H G K H E K G Q L G K A T F A E - c C T V R A T R I D T S L E N T N S T A N T R K A S L A K R P L P S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d K Q V T R A V R I S V E N S F V F L V A F V L F A L K A F R G K G L - e R C L E P S G S R C R T P F C L C C P L C S F P W S P L A V K A S - f E A C N P R G P D V G R Q F V C V A R C V R S L G A Q C L S R Q R - BsrBI BbsI BbsI NarI | | | | TATGCCGCTCTTGATGTGATCGAGAAGACCCTTTGACTTTTGGAAGGCGTACTCGGTGTCGTTGGCTGCTAAGTGAGAATCTTCATCGTCTTCGTTTCGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ATACGGCGAGAACTACACTAGCTCTTCTGGGAAACTGAAAACCTTCCGCATGAGCCACAGCAACCGACGATTCACTCTTAGAAGTAGCAGAAGCAAAGCC a C R S * C D R E D P L T F G R R T R C R W L L S E N L H R L R F G - b Y A A L D V I E K T L * L L E G V L G V V G C * V R I F I V F V S A - c M P L L M * S R R P F D F W K A Y S V S L A A K * E S S S S S F R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d I G S K I H D L L G K S K Q F A Y E T D N A A L H S D E D D E N R - e Y A A R S T I S F V R Q S K S P T S P T T P Q * T L I K M T K T E - f T H R E Q H S R S S G K V K P L R V R H R Q S S L S F R * R R R K P - EciI BseRI BsrDI DrdII | | | | CGCCAGAAGCGGCGGATCATGGGAATAAAAGTGGCAATGGCTCCTCCCACGATCCATCTTCGCCAGCGATGGTTCTCGGCTTCTTTAGCGATGCTGCGTA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCGGTCTTCGCCGCCTAGTACCCTTATTTTCACCGTTACCGAGGAGGGTGCTAGGTAGAAGCGGTCGCTACCAAGAGCCGAAGAAATCGCTACGACGCAT a A R S G G S W E * K W Q W L L P R S I F A S D G S R L L * R C C V - b P E A A D H G N K S G N G S S H D P S S P A M V L G F F S D A A Y - c R Q K R R I M G I K V A M A P P T I H L R Q R W F S A S L A M L R T - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d R W F R R I M P I F T A I A G G V I W R R W R H N E A E K A I S R - e A G S A A S * P F L L P L P E E W S G D E G A I T R P K K L S A A Y - f A L L P P D H S Y F H C H S R G R D M K A L S P E R S R * R H Q T - BbsI Bce83I MluI | XcmI | | | | CCTCACCTTGCAAAATTCTCAAGTCATTCAAGACAAAAATCGTCTGGTTGCGAAGaCGCGTTTCAAGCTCATAGGCCGACATGGAAGCATCGCCACTTCG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GGAGTGGAACGTTTTAAGAGTTCAGTAAGTTCTGTTTTTAGCAGACCAACGCTTCtGCGCAAAGTTCGAGTATCCGGCTGTACCTTCGTAGCGGTGAAGC a P H L A K F S S H S R Q K S S G C E D A F Q A H R P T W K H R H F V - b L T L Q N S Q V I Q D K N R L V A K T R F K L I G R H G S I A T S - c S P C K I L K S F K T K I V W L R R R V S S S * A D M E A S P L R - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d V E G Q L I R L D N L V F I T Q N R L R T E L E Y A S M S A D G S R - e R V K C F E * T M * S L F R R T A F V R K L S M P R C P L M A V E - f G * R A F N E L * E L C F D D P Q S S A N * A * L G V H F C R W K - BspMI PvuII | KpnI | | | TCGCTGGCGCTGCAAGCTGATGTATTCTCGCAGATTGAACTGACAATTCGTTCTGAGAGCGCGAAGCTCTCCCAAGTCagcTGGGATATTAGCAGGTACC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AGCGACCGCGACGTTCGACTACATAAGAGCGTCTAACTTGACTGTTAAGCAAGACTCTCGCGCTTCGAGAGGGTTCAGtcgACCCTATAATCGTCCATGG a A G A A S * C I L A D * T D N S F * E R E A L P S Q L G Y * Q V P - b S L A L Q A D V F S Q I E L T I R S E S A K L S Q V S W D I S R Y H - c R W R C K L M Y S R R L N * Q F V L R A R S S P K S A G I L A G T - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R Q R Q L S I Y E R L N F Q C N T R L A R L E G L D A P I N A P V - e D S A S C A S T N E C I S S V I R E S L A F S E W T L Q S I L L Y - f T A P A A L Q H I R A S Q V S L E N Q S R S A R G L * S P Y * C T G - NcoI MscI|DrdII EcoRV BspGI || | | | ATCTGGTGaggcGGCTTTATTGCGCTGGCCATGGTTCCGGGATTGTTGGGCAGataggACTCAGATATCGGGCGCATAGGGAGGTCATTGGGTCCAGTCT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TAGACCACtccgCCGAAATAACGCGACCGGTACCAAGGCCCTAACAACCCGTCtatccTGAGTCTATAGCCCGCGTATCCCTCCAGTAACCCAGGTCAGA a S G E A A L L R W P W F R D C W A D R T Q I S G A * G G H W V Q S - b L V R R L Y C A G H G S G I V G Q I G L R Y R A H R E V I G S S L - c I W * G G F I A L A M V P G L L G R * D S D I G R I G R S L G P V W - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d M Q H P P K I A S A M T G P N N P L Y S E S I P R M P L D N P G T - e W R T L R S * Q A P W P E P I T P C I P S L Y R A C L S T M P D L R - f D P S A A K N R Q G H N R S Q Q A S L V * I D P A Y P P * Q T W D - ApaI Bpu10I | | GGGGCCCACTGACGGGAGGATAGTTCTGAGGGTTGTACTGCGATTCAAAGTGCTGAGGGTTGTAGCCTGGTCGATAGTAGTCCTGGGTACTGAAGttcTG 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 CCCCGGGTGACTGCCCTCCTATCAAGACTCCCAACATGACGCTAAGTTTCACGACTCCCAACATCGGACCAGCTATCATCAGGACCCATGACTTCaagAC a G A H * R E D S S E G C T A I Q S A E G C S L V D S S P G Y * S S E - b G P T D G R I V L R V V L R F K V L R V V A W S I V V L G T E V L - c G P L T G G * F * G L Y C D S K C * G L * P G R * * S W V L K F * - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d Q P G S V P P Y N Q P N Y Q S E F H Q P N Y G P R Y Y D Q T S F N Q - e P G V S P L I T R L T T S R N L T S L T T A Q D I T T R P V S T R - f P A W Q R S S L E S P Q V A I * L A S P Q L R T S L L G P Y Q L E - NruI Eco57I PvuI | Eco57I | SgfI | | | | | AGTGCCAAACTGCTGAGATCCATACTGAGCTTCAGGACCAGGATATGACTTTGCTCTCTCTGGGCCTCGCTCATACCCGCGATCGCGACCAGCACGGTCA 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 TCACGGTTTGACGACTCTAGGTATGACTCGAAGTCCTGGTCCTATACTGAAACGAGAGAGACCCGGAGCGAGTATGGGCGCTAGCGCTGGTCGTGCCAGT a C Q T A E I H T E L Q D Q D M T L L S L G L A H T R D R D Q H G H - b S A K L L R S I L S F R T R I * L C S L W A S L I P A I A T S T V T - c V P N C * D P Y * A S G P G Y D F A L S G P R S Y P R S R P A R S - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d T G F Q Q S G Y Q A E P G P Y S K A R E P G R E Y G R D R G A R D - e L A L S S L D M S L K L V L I H S Q E R Q A E S M G A I A V L V T - f S H W V A S I W V S S * S W S I V K S E R P R A * V R S R S W C P * - BsaI BamHI BssSI EcoRI | | | | CGTTCGCGCTCCTGGTCTCGCGTAGGAGAAGGGCTGCGGATGGGTTGAGGATCCAGAGATCgaagcctcgtgccgaattc 1101 ---------+---------+---------+---------+---------+---------+---------+---------+ 1180 GCAAGCGCGAGGACCAGAGCGCATCCTCTTCCCGACGCCTACCCAACTCCTAGGTCTCTAGcttcggagcacggcttaag a V R A P G L A * E K G C G W V E D P E I E A S C R I - b F A L L V S R R R R A A D G L R I Q R S K P R A E F - c R S R S W S R V G E G L R M G * G S R D R S L V P N - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+ 1180 d R E R E Q D R T P S P S R I P Q P D L S R L R T G F E - e V N A S R T E R L L L A A S P N L I W L D F G R A S N - f T R A G P R A Y S F P Q P H T S S G S I S A E H R I - Enzymes that do cut: ApaI BamHI BbsI Bce83I BglI Bpu10I BsaI BseRI BsgI BspGI BspMI BsrBI BsrDI BssSI DrdI DrdII EciI Eco57I EcoRI EcoRV KpnI MluI MscI NarI NcoI NruI PvuI PvuII SalI SgfI XcmI XhoI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BcgI BclI BfiI BglII BplI BpmI Bpu1102I BsaBI BsaXI BsbI BsiWI BsmI BsmBI BspEI BspLU11I BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII EagI EarI Eco47III EcoNI FseI FspI HgiEII HindIII HpaI MfeI NdeI NgoAIV NheI NotI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI RcaI RsrII SacI SacII SanDI SapI ScaI SexAI SfiI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XmnI