(Linear) MAP of: ./Contig369.seq check: 6508 from: 1 to: 1414 Contig369 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. XhoI ApaI | Bst1107I | | | cgttgggtccgggcccccctcgagtttttttttttttttttttttttgaataaacaaataaaataaatttaaccatatctACAGTTCAAAAAACTATGTA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 gcaacccaggcccggggggagctcaaaaaaaaaaaaaaaaaaaaaaacttatttgtttattttatttaaattggtatagaTGTCAAGTTTTTTGATACAT a R W V R A P L E F F F F F F F L N K Q I K * I * P Y L Q F K K L C I - b V G S G P P S S F F F F F F F * I N K * N K F N H I Y S S K N Y V - c L G P G P P R V F F F F F F F E * T N K I N L T I S T V Q K T M Y - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P G P G G R T K K K K K K K S Y V F L I F K V M D V T * F V I Y - e T P D P G G E L K K K K K K K Q I F L Y F L N L W I * L E F F * T - f Q T R A G R S N K K K K K K K F L C I F Y I * G Y R C N L F S H - XbaI EarI | | TACGCTCTAGATAAAACGAAGAGGCCCTTTCCCAAAGCCCAATTAAAAAGAAGTATTGTATAACCACTCATCATGCCTTTATAGGGCTGCGACGAAAGCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ATGCGAGATCTATTTTGCTTCTCCGGGAAAGGGTTTCGGGTTAATTTTTCTTCATAACATATTGGTGAGTAGTACGGAAATATCCCGACGCTGCTTTCGT a R S R * N E E A L S Q S P I K K K Y C I T T H H A F I G L R R K H - b Y A L D K T K R P F P K A Q L K R S I V * P L I M P L * G C D E S T - c T L * I K R R G P F P K P N * K E V L Y N H S S C L Y R A A T K A - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d V S * I F R L P G K G F G L * F S T N Y L W E D H R * L A A V F A - e Y A R S L V F L G K G L A W N F L L I T Y G S M M G K Y P Q S S L - f I R E L Y F S S A R E W L G I L F F Y Q I V V * * A K I P S R R F C - BclI EciI PflMI | | | CCAACAACAACGGCTGCAACAACAGGCACGTTCCAGCCTGATGCACCGTTGATCACCACAGGGGGAGTGCCTGCGGGCTCAGAAGGTCCGCCAGCTTGTG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GGTTGTTGTTGCCGACGTTGTTGTCCGTGCAAGGTCGGACTACGTGGCAACTAGTGGTGTCCCCCTCACGGACGCCCGAGTCTTCCAGGCGGTCGAACAC a Q Q Q R L Q Q Q A R S S L M H R * S P Q G E C L R A Q K V R Q L V - b N N N G C N N R H V P A * C T V D H H R G S A C G L R R S A S L W - c P T T T A A T T G T F Q P D A P L I T T G G V P A G S E G P P A C G - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G V V V A A V V P V N W G S A G N I V V P P T G A P E S P G G A Q - e V L L L P Q L L L C T G A Q H V T S * W L P L A Q P S L L D A L K H - f W C C R S C C C A R E L R I C R Q D G C P S H R R A * F T R W S T - Bce83I PshAI Psp1406I BseRI XhoI | | | | GTGTACCTGTGGGCTTGACAACTGTCGCAACGCTTGAGGGGATCTGGGGGAAAACGTTTGTGGGGCGGTAGGTATGAAGCTCCTCGAGAGGGTTGGGCTT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CACATGGACACCCGAACTGTTGACAGCGTTGCGAACTCCCCTAGACCCCCTTTTGCAAACACCCCGCCATCCATACTTCGAGGAGCTCTCCCAACCCGAA a V Y L W A * Q L S Q R L R G S G G K R L W G G R Y E A P R E G W A W - b C T C G L D N C R N A * G D L G E N V C G A V G M K L L E R V G L - c V P V G L T T V A T L E G I W G K T F V G R * V * S S S R G L G L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d P T G T P K V V T A V S S P I Q P F V N T P R Y T H L E E L P N P K - e H V Q P S S L Q R L A Q P S R P S F T Q P A T P I F S R S L T P S - f T Y R H A Q C S D C R K L P D P P F R K H P P L Y S A G R S P Q A - XcmI MscI | | GGGGGCATCACCGCTAGGCTTGTCGGAATCACCAGTAGGGTTATGGGAGTCGCCAGTAGGCTTGGGAGAATCGCCGCCAGTAGGTCTGGGGTAATCTTGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCCCCGTAGTGGCGATCCGAACAGCCTTAGTGGTCATCCCAATACCCTCAGCGGTCATCCGAACCCTCTTAGCGGCGGTCATCCAGACCCCATTAGAACC a G H H R * A C R N H Q * G Y G S R Q * A W E N R R Q * V W G N L G - b G G I T A R L V G I T S R V M G V A S R L G R I A A S R S G V I L A - c G A S P L G L S E S P V G L W E S P V G L G E S P P V G L G * S W - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P A D G S P K D S D G T P N H S D G T P K P S D G G T P R P Y D Q - e P P M V A L S T P I V L L T I P T A L L S P L I A A L L D P T I K - f Q P C * R * A Q R F * W Y P * P L R W Y A Q S F R R W Y T Q P L R P - XcmI PinAI | | CCagggtgGGCCTGGGTAGGCTGGTCATAACCACCAGTCTGCTTGCcaggggcAGTGTAgccACCGGTAGCAGTCTcctTGTCGTCATCGTTGTGGTGTc 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GGtcccacCCGGACCCATCCGACCAGTATTGGTGGTCAGACGAACGgtccccgTCACATcggTGGCCATCGTCAGAggaACAGCAGTAGCAACACCACAg a Q G G P G * A G H N H Q S A C Q G Q C S H R * Q S P C R H R C G V - b R V G L G R L V I T T S L L A R G S V A T G S S L L V V I V V V S - c P G W A W V G W S * P P V C L P G A V * P P V A V S L S S S L W C P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d G P H A Q T P Q D Y G G T Q K G P A T Y G G T A T E K D D D N H H - e A L T P R P L S T M V V L R S A L P L T A V P L L R R T T M T T T D - f W P P G P Y A P * L W W D A Q W P C H L W R Y C D G Q R * R Q P T - Bce83I Bpu10I | | cgtggcccttgagaggaccacaggtagcgcagtagccaggaacgggagtaggcttaggagccttaacgacaggggtgatggtgacggtgcggtatccctt 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 gcaccgggaactctcctggtgtccatcgcgtcatcggtccttgccctcatccgaatcctcggaattgctgtccccactaccactgccacgccatagggaa a R G P * E D H R * R S S Q E R E * A * E P * R Q G * W * R C G I P * - b V A L E R T T G S A V A R N G S R L R S L N D R G D G D G A V S L - c W P L R G P Q V A Q * P G T G V G L G A L T T G V M V T V R Y P L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d G H G K L P G C T A C Y G P V P T P K P A K V V P T I T V T R Y G K - e T A R S L V V P L A T A L F P L L S L L R L S L P S P S P A T D R - f R P G Q S S W L Y R L L W S R S Y A * S G * R C P H H H R H P I G - EarI XcmI SapI BsbI | | | agtggtagcctccttgcaaccaaagttgccagcgccacactggatagcctcggggatggtgaagatgccagtgggctcttcgggcgaggcgatctgcgtg 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 tcaccatcggaggaacgttggtttcaacggtcgcggtgtgacctatcggagcccctaccacttctacggtcacccgagaagcccgctccgctagacgcac a W * P P C N Q S C Q R H T G * P R G W * R C Q W A L R A R R S A C - b S G S L L A T K V A S A T L D S L G D G E D A S G L F G R G D L R V - c V V A S L Q P K L P A P H W I A S G M V K M P V G S S G E A I C V - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d T T A E K C G F N G A G C Q I A E P I T F I G T P E E P S A I Q T - e L P L R R A V L T A L A V S S L R P S P S S A L P S K P R P S R R - f * H Y G G Q L W L Q W R W V P Y G R P H H L H W H A R R A L R D A H - ttgtgtacgatctcggtgataacgctggtgtggcaagctccctctcngggGCAAGATGTAATGGTGTGCATGTTTGTggcAGTAACATAGGAAGTGAGGT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 aacacatgctagagccactattgcgaccacaccgttcgagggagagncccCGTTCTACATTACCACACGTACAAACAccgTCATTGTATCCTTCACTCCA a C V R S R * * R W C G K L P L ? G K M * W C A C L W Q * H R K * G - b V Y D L G D N A G V A S S L S G A R C N G V H V C G S N I G S E V - c L C T I S V I T L V W Q A P S ? G Q D V M V C M F V A V T * E V R * - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d N H V I E T I V S T H C A G E ? P C S T I T H M N T A T V Y S T L - e T T Y S R P S L A P T A L E R E P A L H L P T C T Q P L L M P L S T - f Q T R D R H Y R Q H P L S G R ? P L I Y H H A H K H C Y C L F H P - SgrAI BspGI NarI | AlwNI | | | | | GAACGGcgccggTgGGATGGGTAGCACCCTCGccttCGAcTgTGGTAGAGTGAGAAGAAGAATcGTCAGAGCCTGGACAGTAGGTTGTGAGAGAGGTGAT 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 CTTGCCgcggccAcCCTACCCATCGTGGGAGCggaaGCTgAcACCATCTCACTCTTCTTCTTAgCAGTCTCGGACCTGTCATCCAACACTCTCTCCACTA a E R R R W D G * H P R L R L W * S E K K N R Q S L D S R L * E R * W - b N G A G G M G S T L A F D C G R V R R R I V R A W T V G C E R G D - c T A P V G W V A P S P S T V V E * E E E S S E P G Q * V V R E V M - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d H V A G T P H T A G E G E V T T S H S S S D D S G P C Y T T L S T I - e F P A P P I P L V R A K S Q P L T L L L I T L A Q V T P Q S L P S - f S R R R H S P Y C G R R R S H Y L S F F F R * L R S L L N H S L H - BsaI BglI | | GGTCTCCGTGGTGACTTGGCCGACAGGGCAGTTTGTGACGCTGGGGGGGCAGGCGGTaACGGTGTAGAccTTGCTGGTgaCgacGGTAGAGGTGATGGTG 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CCAGAGGCACCACTGAACCGGCTGTCCCGTCAAACACTGCGACCCCCCCGTCCGCCAtTGCCACATCTggAACGACCActGctgCCATCTCCACTACCAC a S P W * L G R Q G S L * R W G G R R * R C R P C W * R R * R * W W - b G L R G D L A D R A V C D A G G A G G N G V D L A G D D G R G D G G - c V S V V T W P T G Q F V T L G G Q A V T V * T L L V T T V E V M V - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d T E T T V Q G V P C N T V S P P C A T V T Y V K S T V V T S T I T - e P R R P S K A S L A T Q S A P P A P P L P T S R A P S S P L P S P - f H D G H H S P R C P L K H R Q P P L R Y R H L G Q Q H R R Y L H H H - EarI | GTGGAAGCAGAAGAGTCAGTGTAGCTGGGAAGCTCGTAAGACTCGCCTGAACCGCCAGTAGCCTTCTTGGTGGTAGAAGTGCCCTTTCCGGTGACGGAGG 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 CACCTTCGTCTTCTCAGTCACATCGACCCTTCGAGCATTCTGAGCGGACTTGGCGGTCATCGGAAGAACCACCATCTTCACGGGAAAGGCCACTGCCTCC a W K Q K S Q C S W E A R K T R L N R Q * P S W W * K C P F R * R R - b G S R R V S V A G K L V R L A * T A S S L L G G R S A L S G D G G - c V E A E E S V * L G S S * D S P E P P V A F L V V E V P F P V T E A - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d T S A S S D T Y S P L E Y S E G S G G T A K K T T S T G K G T V S - e P P L L L T L T A P F S T L S A Q V A L L R R P P L L A R E P S P P - f H F C F L * H L Q S A R L V R R F R W Y G E Q H Y F H G K R H R L - AatII | CTGTACTGTTGGAGTAACGAGTAGTAGGGAAGTAGCCAGTGGTGGTGTCAGTCTCAGCGGAAGTGACGTCCTCGGTAGTAGCAGTGACAGCCTCACTCTC 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 GACATGACAACCTCATTGCTCATCATCCCTTCATCGGTCACCACCACAGTCAGAGTCGCCTTCACTGCAGGAGCCATCATCGTCACTGTCGGAGTGAGAG a L Y C W S N E * * G S S Q W W C Q S Q R K * R P R * * Q * Q P H S Q - b C T V G V T S S R E V A S G G V S L S G S D V L G S S S D S L T L - c V L L E * R V V G K * P V V V S V S A E V T S S V V A V T A S L S - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d A T S N S Y R T T P F Y G T T T D T E A S T V D E T T A T V A E S E - e Q V T P T V L L L S T A L P P T L R L P L S T R P L L L S L R V R - f S Y Q Q L L S Y Y P L L W H H H * D * R F H R G R Y Y C H C G * E - BsaI BsaI BsmBI BsaI DrdII MscI | | | | | | AGTGGCAGAAGCAGTCTCGGTCTCGGTCTCAGTCTCGGTAGCAGAAGCCGTCTCAGAAGCAGAAGTGGTGGTCTCAGAGTCAGAACCACACTGGCCAACC 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 TCACCGTCTTCGTCAGAGCCAGAGCCAGAGTCAGAGCCATCGTCTTCGGCAGAGTCTTCGTCTTCACCACCAGAGTCTCAGTCTTGGTGTGACCGGTTGG a W Q K Q S R S R S Q S R * Q K P S Q K Q K W W S Q S Q N H T G Q P - b S G R S S L G L G L S L G S R S R L R S R S G G L R V R T T L A N P - c V A E A V S V S V S V S V A E A V S E A E V V V S E S E P H W P T - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 d T A S A T E T E T E T E T A S A T E S A S T T T E S D S G C Q G V - e L P L L L R P R P R L R P L L L R R L L L L P P R L T L V V S A L - f * H C F C D R D R D * D R Y C F G D * F C F H H D * L * F W V P W G - BssSI EcoRI | | CTcgtgccgaattc 1401 ---------+---- 1414 GAgcacggcttaag a S C R I - b R A E F - c L V P N - 1401 ---------+---- 1414 d R T G F E - e G R A S N - f E H R I - Enzymes that do cut: AatII AlwNI ApaI Bce83I BclI BglI Bpu10I BsaI BsbI BseRI BsmBI BspGI BssSI Bst1107I DrdII EarI EciI EcoRI MscI NarI PflMI PinAI PshAI Psp1406I SapI SgrAI XbaI XcmI XhoI Enzymes that do not cut: AceIII AflII AhdI ApaBI ApaLI AscI AvrII BamHI BbsI BcgI BfiI BglII BplI BpmI Bpu1102I BsaBI BsaXI BsgI BsiWI BsmI BspEI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII BstEII BstXI Bsu36I ClaI DraI DraIII DrdI EagI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PmeI PmlI PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI ScaI SexAI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XmnI