(Linear) MAP of: ./Contig445.seq check: 4685 from: 1 to: 648 Contig445 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI BsbI | | | GAATTCGGCACGAGGCAAGCATCTTTCTACTACATTCTACAAACAACACTCGCTCAAAACACACTTCTCCAAACAAACCACCAACCGCAAACATGAAGTT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGTTCGTAGAAAGATGATGTAAGATGTTTGTTGTGAGCGAGTTTTGTGTGAAGAGGTTTGTTTGGTGGTTGGCGTTTGTACTTCAA a E F G T R Q A S F Y Y I L Q T T L A Q N T L L Q T N H Q P Q T * S S - b N S A R G K H L S T T F Y K Q H S L K T H F S K Q T T N R K H E V - c I R H E A S I F L L H S T N N T R S K H T S P N K P P T A N M K F - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P L C R E V V N * L C C E S L V C K E L C V V L R L C S T - e N P V L C A D K * * M R C V V S A * F V S R W V F W W G C V H L - f I R C S A L M K R S C E V F L V R E F C V E G F L G G V A F M F N - BsmBI AlwNI BsgI KpnI BspMI | | | | | CACCGCCGTCGCCATCACTGCTCTCGCCTCCGTCGCCGCCGCGTCTCCCAGCGGCTGCAAGCCTGGTACCTACTCCTGCACTCCCGACAAGAGTGGCTGG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTGGCGGCAGCGGTAGTGACGAGAGCGGAGGCAGCGGCGGCGCAGAGGGTCGCCGACGTTCGGACCATGGATGAGGACGTGAGGGCTGTTCTCACCGACC a P P S P S L L S P P S P P R L P A A A S L V P T P A L P T R V A G - b H R R R H H C S R L R R R R V S Q R L Q A W Y L L L H S R Q E W L A - c T A V A I T A L A S V A A A S P S G C K P G T Y S C T P D K S G W - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d * R R R W * Q E R R R R R R T E W R S C A Q Y R S R C E R C S H S - e E G G D G D S S E G G D G G R R G A A A L R T G V G A S G V L T A P - f V A T A M V A R A E T A A A D G L P Q L G P V * E Q V G S L L P Q - BbsI BpmI| EarI PflMI PinAI|| SapI | ||| | CAGGTCTGCGATGTCACCAGCCAGTGGGTTGCTGCTGGAGTTTGCCCTCCCAAGACCGGTTGTGTCTTCTACAAGAAGAGCGCCAGCCCCTACTGTGTCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTCCAGACGCTACAGTGGTCGGTCACCCAACGACGACCTCAAACGGGAGGGTTCTGGCCAACACAGAAGATGTTCTTCTCGCGGTCGGGGATGACACAGG a R S A M S P A S G L L L E F A L P R P V V S S T R R A P A P T V S - b G L R C H Q P V G C C W S L P S Q D R L C L L Q E E R Q P L L C P - c Q V C D V T S Q W V A A G V C P P K T G C V F Y K K S A S P Y C V P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A P R R H * W G T P Q Q Q L K G E W S R N H R R C S S R W G R S H G - e L D A I D G A L P N S S S N A R G L G T T D E V L L A G A G V T D - f C T Q S T V L W H T A A P T Q G G L V P Q T K * L F L A L G * Q T - BfiI | CTCCCGGCTTCAAGTTCCCCCAGTAAGCTCTCAAAGCGATGAGATAGCCATAGGAGTTCTTTGAATACATATTAACAACTCTCGACAACGACTTCTATCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GAGGGCCGAAGTTCAAGGGGGTCATTCGAGAGTTTCGCTACTCTATCGGTATCCTCAAGAAACTTATGTATAATTGTTGAGAGCTGTTGCTGAAGATAGA a L P A S S S P S K L S K R * D S H R S S L N T Y * Q L S T T T S I S - b S R L Q V P P V S S Q S D E I A I G V L * I H I N N S R Q R L L S - c P G F K F P Q * A L K A M R * P * E F F E Y I L T T L D N D F Y L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d E R S * T G G T L E * L S S I A M P T R Q I C I L L E R C R S R D - e R G A E L E G L L S E F R H S L W L L E K F V Y * C S E V V V E I - f G G P K L N G W Y A R L A I L Y G Y S N K S Y M N V V R S L S K * R - Sse8647I | CTGCGGCTTGGGTTCCGACTTGTGCATTTGGTCTTTTCTTTATATACTTGTTTTCATGCACACTGCATGAGGTCCTTTCCTTAGAAATGTTGATAGAAAC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GACGCCGAACCCAAGGCTGAACACGTAAACCAGAAAAGAAATATATGAACAAAAGTACGTGTGACGTACTCCAGGAAAGGAATCTTTACAACTATCTTTG a A A W V P T C A F G L F F I Y L F S C T L H E V L S L E M L I E T - b L R L G F R L V H L V F S L Y T C F H A H C M R S F P * K C * * K H - c C G L G S D L C I W S F L Y I L V F M H T A * G P F L R N V D R N - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R R S P N R S T C K T K E K Y V Q K * A C Q M L D K G * F H Q Y F - e E A A Q T G V Q A N P R K K I Y K N E H V S C S T R E K S I N I S V - f Q P K P E S K H M Q D K R * I S T K M C V A H P G K R L F T S L F - Bce83I BsrDI DraI | | | ATGGCACATACACAGAAACAGCATGTGGGAGTTTCAAGATCGTATATTAGTTACTCAAGCATAGCATCTTCAATCTACTGCATTGCTCCTTTAAAAAAAA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TACCGTGTATGTGTCTTTGTCGTACACCCTCAAAGTTCTAGCATATAATCAATGAGTTCGTATCGTAGAAGTTAGATGACGTAACGAGGAAATTTTTTTT a W H I H R N S M W E F Q D R I L V T Q A * H L Q S T A L L L * K K - b G T Y T E T A C G S F K I V Y * L L K H S I F N L L H C S F K K K - c M A H T Q K Q H V G V S R S Y I S Y S S I A S S I Y C I A P L K K K - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d C P V Y V S V A H P L K L I T Y * N S L C L M K L R S C Q E K L F F - e H C M C L F L M H S N * S R I N T V * A Y C R * D V A N S R * F F - f M A C V C F C C T P T E L D Y I L * E L M A D E I * Q M A G K F F - XhoI ApaI | | AAAAAAAAAAAAActcgagggggggggcccngggtacaccaaatttgg 601 ---------+---------+---------+---------+-------- 648 TTTTTTTTTTTTTgagctcccccccccgggncccatgtggtttaaacc a K K K K T R G G G P ? V H Q I W - b K K K K L E G G G P G Y T K F - c K K K N S R G G A ? G T P N L - 601 ---------+---------+---------+---------+-------- 648 d F F F F S S P P P G P Y V L N P - e F F F F V R P P P G ? T C W I Q - f F F F F F E L P P A ? P V G F K - Enzymes that do cut: AlwNI ApaI BbsI Bce83I BfiI BpmI BsbI BsgI BsmBI BspMI BsrDI BssSI DraI EarI EcoRI KpnI PflMI PinAI SapI Sse8647I XhoI Enzymes that do not cut: AatII AceIII AflII AhdI ApaBI ApaLI AscI AvrII BamHI BcgI BclI BglI BglII BplI Bpu10I Bpu1102I BsaI BsaBI BsaXI BseRI BsiWI BsmI BspEI BspGI BspLU11I BsrBI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraIII DrdI DrdII EagI EciI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI