(Linear) MAP of: ./Contig471.seq check: 114 from: 1 to: 356 Contig471 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. HindIII RcaI | | TTTTTTTTTTTTTTTTTTTCTCAGCACAAGGGTAGTATTTAAGCTTAATCTGTAGCTAACTATCCAAGCGCATATCCCAATCACATCATGATCTCAACTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AAAAAAAAAAAAAAAAAAAGAGTCGTGTTCCCATCATAAATTCGAATTAGACATCGATTGATAGGTTCGCGTATAGGGTTAGTGTAGTACTAGAGTTGAG a F F F F F F S Q H K G S I * A * S V A N Y P S A Y P N H I M I S T P - b F F F F F F L S T R V V F K L N L * L T I Q A H I P I T S * S Q L - c F F F F F F S A Q G * Y L S L I C S * L S K R I S Q S H H D L N S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d K K K K K E * C L P L I * A * D T A L * G L A Y G L * M M I E V - e K K K K K K E A C P Y Y K L K I Q L * S D L R M D W D C * S R L E - f K K K K K K R L V L T T N L S L R Y S V I W A C I G I V D H D * S - EciI HindIII BclI | | | CGCCCTTCATAACTCCGTCCGTGATTCGTCGTCAAAGGATGTATCTTGACCCAAGCTTGGGCCTAGAACAAGTGGTATCCGAATGATCAAAGATCAAGTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GCGGGAAGTATTGAGGCAGGCACTAAGCAGCAGTTTCCTACATAGAACTGGGTTCGAACCCGGATCTTGTTCACCATAGGCTTACTAGTTTCTAGTTCAA a P F I T P S V I R R Q R M Y L D P S L G L E Q V V S E * S K I K L - b R P S * L R P * F V V K G C I L T Q A W A * N K W Y P N D Q R S S C - c A L H N S V R D S S S K D V S * P K L G P R T S G I R M I K D Q V - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G G K M V G D T I R R * L I Y R S G L K P R S C T T D S H D F I L N - e A R * L E T R S E D D F S T D Q G L S P G L V L P I R I I L S * T - f R G E Y S R G H N T T L P H I K V W A Q A * F L H Y G F S * L D L - EarI | GTTTATTTGCCGCAGCCAGAGCAAGAGCAGCTAGAGCCGCAGTTGCAAGAAGAGGCACCAGAGCAGCCACAGTCGCCAGCCATTGTGAAGATTGTTTGGT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CAAATAAACGGCGTCGGTCTCGTTCTCGTCGATCTCGGCGTCAACGTTCTTCTCCGTGGTCTCGTCGGTGTCAGCGGTCGGTAACACTTCTAACAAACCA a F I C R S Q S K S S * S R S C K K R H Q S S H S R Q P L * R L F G - b L F A A A R A R A A R A A V A R R G T R A A T V A S H C E D C L V - c V Y L P Q P E Q E Q L E P Q L Q E E A P E Q P Q S P A I V K I V W W - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d N I Q R L W L L L L * L R L Q L F L C W L L W L R W G N H L N N P - e T * K G C G S C S C S S G C N C S S A G S C G C D G A M T F I T Q - f Q K N A A A L A L A A L A A T A L L P V L A A V T A L W Q S S Q K T - DraI BssSI EcoRI | | | GGTTGGAAGGAAGTTGTTTAAAAAGGGTGTTATAGTAGTTGCCTCGTGCCGAATTC 301 ---------+---------+---------+---------+---------+------ 356 CCAACCTTCCTTCAACAAATTTTTCCCACAATATCATCAACGGAGCACGGCTTAAG a G W K E V V * K G C Y S S C L V P N - b V G R K L F K K G V I V V A S C R I - c L E G S C L K R V L * * L P R A E F - 301 ---------+---------+---------+---------+---------+------ 356 d P Q F S T T * F P H * L L Q R T G F E - e H N S P L Q K F L T N Y Y N G R A S N - f T P L F N N L F P T I T T A E H R I - Enzymes that do cut: BclI BssSI DraI EarI EciI EcoRI HindIII RcaI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BfiI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraIII DrdI DrdII EagI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI