(Linear) MAP of: ./Contig565.seq check: 7848 from: 1 to: 644 Contig565 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:47 .. NsiI MluI BsmI | PflMI | | | | TTTTTTTTTTTTTTTTtggTATCAAAATTGATATTGACGCGTGTACTCCTATATGCATTCGCATCCAGGAAGCATGGAGCGATTGACAACCAGCAAGTGG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AAAAAAAAAAAAAAAAaccATAGTTTTAACTATAACTGCGCACATGAGGATATACGTAAGCGTAGGTCCTTCGTACCTCGCTAACTGTTGGTCGTTCACC a F F F F F L V S K L I L T R V L L Y A F A S R K H G A I D N Q Q V D - b F F F F F W Y Q N * Y * R V Y S Y M H S H P G S M E R L T T S K W - c F F F F F G I K I D I D A C T P I C I R I Q E A W S D * Q P A S G - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d K K K K K T D F N I N V R T S R Y A N A D L F C P A I S L W C T - e K K K K K P I L I S I S A H V G I H M R M W S A H L S Q C G A L P - f K K K K K Q Y * F Q Y Q R T Y E * I C E C G P L M S R N V V L L H - EcoRV BsrGI Eco57I | | | ATATCATACAGAAAGAAACAACAAAACAATGTACAATGCTATCCAAAAAGGCATATAAAAAAACACGCTTCAACTACAGCTTGGCCTTGGTCTGGGCCTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TATAGTATGTCTTTCTTTGTTGTTTTGTTACATGTTACGATAGGTTTTTCCGTATATTTTTTTGTGCGAAGTTGATGTCGAACCGGAACCAGACCCGGAA a I I Q K E T T K Q C T M L S K K A Y K K T R F N Y S L A L V W A F - b I S Y R K K Q Q N N V Q C Y P K R H I K K H A S T T A W P W S G P S - c Y H T E R N N K T M Y N A I Q K G I * K N T L Q L Q L G L G L G L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S I M C F S V V F C H V I S D L F A Y L F V R K L * L K A K T Q A K - e Y * V S L F L L V I Y L A I W F P M Y F F V S * S C S P R P R P R - f I D Y L F F C C F L T C H * G F L C I F F C A E V V A Q G Q D P G - BsmBI RcaI EarI |Bce83I BcgI | | | | | CTTCAGCACAGGGTCGAGCTTGGTCGCCTTCATGACGTTGCCCTTAATCTTGAGCTTGCCACCCATGAAGAGACGCTGGGCATTGGCCTTGCCAGCGACG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GAAGTCGTGTCCCAGCTCGAACCAGCGGAAGTACTGCAACGGGAATTAGAACTCGAACGGTGGGTACTTCTCTGCGACCCGTAACCGGAACGGTCGCTGC a F S T G S S L V A F M T L P L I L S L P P M K R R W A L A L P A T - b S A Q G R A W S P S * R C P * S * A C H P * R D A G H W P C Q R R - c L Q H R V E L G R L H D V A L N L E L A T H E E T L G I G L A S D E - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d K L V P D L K T A K M V N G K I K L K G G M F L R Q A N A K G A V - e R * C L T S S P R R * S T A R L R S S A V W S S V S P M P R A L S - f E E A C P R A Q D G E H R Q G * D Q A Q W G H L S A P C Q G Q W R R - EarI Eco57I BcgI | AatII BsaI PvuII | | | | | | AGCTTGCCAAAGTTCTCTTCAGAGAGGACGAGGGTGACGTCGGGCTTTTCGCCAGTGCCAGTGGCAACCTTTCCGGTCTCCTTGAGGTCGATATGCCAGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TCGAACGGTTTCAAGAGAAGTCTCTCCTGCTCCCACTGCAGCCCGAAAAGCGGTCACGGTCACCGTTGGAAAGGCCAGAGGAACTCCAGCTATACGGTCG a S L P K F S S E R T R V T S G F S P V P V A T F P V S L R S I C Q L - b A C Q S S L Q R G R G * R R A F R Q C Q W Q P F R S P * G R Y A S - c L A K V L F R E D E G D V G L F A S A S G N L S G L L E V D M P A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d L K G F N E E S L V L T V D P K E G T G T A V K G T E K L D I H W - e S S A L T R K L S S S P S T P S K A L A L P L R E P R R S T S I G A - f A Q W L E R * L P R P H R R A K R W H W H C G K R D G Q P R Y A L - BsaBI Bce83I BsrBI Bce83I PvuI | | | | | | TGGCCTCGTCGCCGCTCGCGTTCTTGAGGGTGAAGGCGTAAACACCGTTGCCCTGCTTGATGGCGTCCTTGCGATCGGCATCGCTGGCGTTGATAGCCTC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACCGGAGCAGCGGCGAGCGCAAGAACTCCCACTTCCGCATTTGTGGCAACGGGACGAACTACCGCAGGAACGCTAGCCGTAGCGACCGCAACTATCGGAG a A S S P L A F L R V K A * T P L P C L M A S L R S A S L A L I A S - b W P R R R S R S * G * R R K H R C P A * W R P C D R H R W R * * P L - c G L V A A R V L E G E G V N T V A L L D G V L A I G I A G V D S L - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S A E D G S A N K L T F A Y V G N G Q K I A D K R D A D S A N I A E - e P R T A A R T R S P S P T F V T A R S S P T R A I P M A P T S L R - f Q G R R R E R E Q P H L R L C R Q G A Q H R G Q S R C R Q R Q Y G - EagI Bce83I | | TTGGATGGCGTCGAAGGCGGCCGAGGCGGGAAACTTGTCGTTCTTGAGAGACATGGTTACTGGTTAGATGGTATGAGTTGAGATTGATGAGTATAATCAA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AACCTACCGCAGCTTCCGCCGGCTCCGCCCTTTGAACAGCAAGAACTCTCTGTACCAATGACCAATCTACCATACTCAACTCTAACTACTCATATTAGTT a W M A S K A A E A G N L S F L R D M V T G * M V * V E I D E Y N Q - b G W R R R R P R R E T C R S * E T W L L V R W Y E L R L M S I I K - c L D G V E G G R G G K L V V L E R H G Y W L D G M S * D * * V * S N - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d Q I A D F A A S A P F K D N K L S M T V P * I T H T S I S S Y L * - e K S P T S P P R P P F S T T R S L C P * Q N S P I L Q S Q H T Y D - f R P H R R L R G L R S V Q R E Q S V H N S T L H Y S N L N I L I I L - Bst1107I BssSI EcoRI | | | ACTAAGGGCAGTATACAGTTTTGAAGAAGCCTCGTGCCGAATtc 601 ---------+---------+---------+---------+---- 644 TGATTCCCGTCATATGTCAAAACTTCTTCGGAGCACGGCTTAag a T K G S I Q F * R S L V P N - b L R A V Y S F E E A S C R I - c * G Q Y T V L K K P R A E F - 601 ---------+---------+---------+---------+---- 644 d V L P L I C N Q L L R T G F E - e F * P C Y V T K F F G R A S N - f S L A T Y L K S S A E H R I - Enzymes that do cut: AatII Bce83I BcgI BsaI BsaBI BsmI BsmBI BsrBI BsrGI BssSI Bst1107I EagI EarI Eco57I EcoRI EcoRV MluI NsiI PflMI PvuI PvuII RcaI Enzymes that do not cut: AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BclI BfiI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaXI BsbI BseRI BsgI BsiWI BspEI BspGI BspLU11I BspMI BsrDI BssHII BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III EcoNI FseI FspI HgiEII HindIII HpaI KpnI MfeI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PstI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI