(Linear) MAP of: ./Contig629.seq check: 8267 from: 1 to: 1437 Contig629 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:47 .. EcoRI BssSI XhoI | | | gaattcggcACGAGGCACCAACCACCGCGTATATTGAAGAATCGCCTCGAGGCTCGCTACATAGAACGGTGCATCCTGACGCAATTCTTTTGAAACGGCG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 cttaagccgTGCTCCGTGGTTGGTGGCGCATATAACTTCTTAGCGGAGCTCCGAGCGATGTATCTTGCCACGTAGGACTGCGTTAAGAAAACTTTGCCGC a E F G T R H Q P P R I L K N R L E A R Y I E R C I L T Q F F * N G A - b N S A R G T N H R V Y * R I A S R L A T * N G A S * R N S F E T A - c I R H E A P T T A Y I E E S P R G S L H R T V H P D A I L L K R R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P V L W R T Y Q L I A E L S A V Y F P A D Q R L E K S V A - e N P V L C W G G R I N F F R R S A R * M S R H M R V C N K Q F P - f I R C S A G V V A Y I S S D G R P E S C L V T C G S A I R K F R R - BssHII BsrDI | | | CACTATTGAAGATTTGTTTGTTTATATAAAGAGGCCCCTTGCGCCTGCTGCCATTGGCGCTATTCCCTCCACCTAGCAATGCGACAGCGCGCTGCTTAAA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTGATAACTTCTAAACAAACAAATATATTTCTCCGGGGAACGCGGACGACGGTAACCGCGATAAGGGAGGTGGATCGTTACGCTGTCGCGCGACGAATTT a L L K I C L F I * R G P L R L L P L A L F P P P S N A T A R C L N - b H Y * R F V C L Y K E A P C A C C H W R Y S L H L A M R Q R A A * M - c T I E D L F V Y I K R P L A P A A I G A I P S T * Q C D S A L L K - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d C * Q L N T Q K Y L S A G Q A Q Q W Q R * E R W R A I R C R A A * - e A S N F I Q K N I Y L P G K R R S G N A S N G G G L L A V A R Q K F - f V I S S K N T * I F L G R A G A A M P A I G E V * C H S L A S S L - DraIII BfiI | NruI BseRI | | NruI | | | | | TGTCGCCCGATCATGGATCGTCGCGGTCGCGACGAGGAGTTTGGAGTCACTGGGTGCCCCTCGCAGTTACACTTACAGTCGCGACTGTAGGTGTGGCTGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 ACAGCGGGCTAGTACCTAGCAGCGCCAGCGCTGCTCCTCAAACCTCAGTGACCCACGGGGAGCGTCAATGTGAATGTCAGCGCTGACATCCACACCGACG a V A R S W I V A V A T R S L E S L G A P R S Y T Y S R D C R C G C - b S P D H G S S R S R R G V W S H W V P L A V T L T V A T V G V A A - c C R P I M D R R G R D E E F G V T G C P S Q L H L Q S R L * V W L L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d I D G S * P D D R D R R P T Q L * Q T G R A T V S V T A V T P T A A - e T A R D H I T A T A V L L K S D S P A G R L * V * L R S Q L H P Q - f H R G I M S R R P R S S S N P T V P H G E C N C K C D R S Y T H S - EarI BseRI BstXI SanDI | | | | TTGGGTATGGAGCCAGAGAAAGGACACGGAAGAGGAGGACGACAATGGCCTTGATTACAGTAACCATGCCCGTGGAGGCGATCATCAAGCATACGGGTCC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AACCCATACCTCGGTCTCTTTCCTGTGCCTTCTCCTCCTGCTGTTACCGGAACTAATGTCATTGGTACGGGCACCTCCGCTAGTAGTTCGTATGCCCAGG a L G M E P E K G H G R G G R Q W P * L Q * P C P W R R S S S I R V P - b W V W S Q R K D T E E E D D N G L D Y S N H A R G G D H Q A Y G S - c G Y G A R E R T R K R R T T M A L I T V T M P V E A I I K H T G P - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d Q T H L W L F S V S S S S S L P R S * L L W A R P P S * * A Y P D - e K P I S G S F P C P L P P R C H G Q N C Y G H G H L R D D L M R T - f S P Y P A L S L V R F L L V V I A K I V T V M G T S A I M L C V P G - DrdI FspI SphI | | | CACGATGTCGGCTCGCGCGACATTCAAGGGCCGGAGAAGCCACCACGACCCGATGGTCAAAGCCACGGAATTGCGCATGCGAACGAAGAAGCAACCGGCG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GTGCTACAGCCGAGCGCGCTGTAAGTTCCCGGCCTCTTCGGTGGTGCTGGGCTACCAGTTTCGGTGCCTTAACGCGTACGCTTGCTTCTTCGTTGGCCGC a R C R L A R H S R A G E A T T T R W S K P R N C A C E R R S N R R - b H D V G S R D I Q G P E K P P R P D G Q S H G I A H A N E E A T G G - c T M S A R A T F K G R R S H H D P M V K A T E L R M R T K K Q P A - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d W S T P E R S M * P G S F G G R G S P * L W P I A C A F S S A V P - e G R H R S A R C E L A P S A V V V R H D F G R F Q A H S R L L L R R - f V I D A R A V N L P R L L W W S G I T L A V S N R M R V F F C G A - BsbI | GGGGCTGGGGTTCGCGCGTGACTGGTGCTCTGCGACGAACACCGAGCCCGCAGCAGTTCTTCGACTCGACAGCGCCCGCCGATACGTCGTCCCAACACAT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CCCCGACCCCAAGCGCGCACTGACCACGAGACGCTGCTTGTGGCTCGGGCGTCGTCAAGAAGCTGAGCTGTCGCGGGCGGCTATGCAGCAGGGTTGTGTA a G L G F A R D W C S A T N T E P A A V L R L D S A R R Y V V P T H - b G W G S R V T G A L R R T P S P Q Q F F D S T A P A D T S S Q H I - c G A G V R A * L V L C D E H R A R S S S S T R Q R P P I R R P N T S - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P P Q P E R T V P A R R R V G L G C C N K S E V A G A S V D D W C M - e P S P N A R S Q H E A V F V S G A A T R R S S L A R R Y T T G V C - f P A P T R A H S T S Q S S C R A R L L E E V R C R G G I R R G L V - BsaXI Eco57I NarI EarI BamHI | BseRI| | | | | || CGGCGGCAGTAGGCGACGCAAGACGGTTGCGATTGTGGTGTCTGCCGAGACAGGCGCCGTGCCTGAAGAGGAGGATCCGTTCCATGAGCACGCTTCCATA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCCGCCGTCATCCGCTGCGTTCTGCCAACGCTAACACCACAGACGGCTCTGTCCGCGGCACGGACTTCTCCTCCTAGGCAAGGTACTCGTGCGAAGGTAT a R R Q * A T Q D G C D C G V C R D R R R A * R G G S V P * A R F H T - b G G S R R R K T V A I V V S A E T G A V P E E E D P F H E H A S I - c A A V G D A R R L R L W C L P R Q A P C L K R R I R S M S T L P Y - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P P L L R R L V T A I T T D A S V P A T G S S S S G N W S C A E M - e R R C Y A V C S P Q S Q P T Q R S L R R A Q L P P D T G H A R K W - f D A A T P S A L R N R N H H R G L C A G H R F L L I R E M L V S G Y - ClaI | CTCTCCCACATCCCTCGACACATCGATCACTCCAAGGTCAAGCTATTTGTTCTGATTTACGCTCCTGGTTTGAAGGAACCCGCcgTGGATACTGCTAATA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GAGAGGGTGTAGGGAGCTGTGTAGCTAGTGAGGTTCCAGTTCGATAAACAAGACTAAATGCGAGGACCAAACTTCCTTGGGCGgcACCTATGACGATTAT a L P H P S T H R S L Q G Q A I C S D L R S W F E G T R R G Y C * * - b L S H I P R H I D H S K V K L F V L I Y A P G L K E P A V D T A N S - c S P T S L D T S I T P R S S Y L F * F T L L V * R N P P W I L L I - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d S E W M G R C M S * E L T L S N T R I * A G P K F S G A T S V A L - e V R G C G E V C R D S W P * A I Q E S K R E Q N S P V R R P Y Q * Y - f E G V D R S V D I V G L D L * K N Q N V S R T Q L F G G H I S S I - Bpu1102I XmnI XcmI EciI BseRI | EarI DrdII |NspV | | | | | | | | | GTAACCTTCCGCCACCTTCGCTAAGCTCCTCATTTTCTAACATTGGACACGATCAAGTTCAAACTCCCGCCGAAGAGTCAAAGAACCAGTTCGAATCTGG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CATTGGAAGGCGGTGGAAGCGATTCGAGGAGTAAAAGATTGTAACCTGTGCTAGTTCAAGTTTGAGGGCGGCTTCTCAGTTTCTTGGTCAAGCTTAGACC a * P S A T F A K L L I F * H W T R S S S N S R R R V K E P V R I W - b N L P P P S L S S S F S N I G H D Q V Q T P A E E S K N Q F E S G - c V T F R H L R * A P H F L T L D T I K F K L P P K S Q R T S S N L E - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d L L R G G G E S L E E N E L M P C S * T * V G A S S D F F W N S D P - e Y G E A V K A L S R M K * C Q V R D L E F E R R L T L S G T R I Q - f T V K R W R R * A G * K R V N S V I L N L S G G F L * L V L E F R - DrdII AlwNI NcoI | MscI Eco57I | | | | | AAGCCCTGCCTTCAACTCAATTTATTCACAGGCTCTGGGTTTGGTTGAGAAGGAAACCATGGTTCTTCCTTTTACTACATCAAATGGCCATGTTCATATC 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 TTCGGGACGGAAGTTGAGTTAAATAAGTGTCCGAGACCCAAACCAACTCTTCCTTTGGTACCAAGAAGGAAAATGATGTAGTTTACCGGTACAAGTATAG a K P C L Q L N L F T G S G F G * E G N H G S S F Y Y I K W P C S Y P - b S P A F N S I Y S Q A L G L V E K E T M V L P F T T S N G H V H I - c A L P S T Q F I H R L W V W L R R K P W F F L L L H Q M A M F I S - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d L G A K L E I * E C A R P K T S F S V M T R G K V V D F P W T * I - e F G Q R * S L K N V P E P N P Q S P F W P E E K * * M L H G H E Y - f S A R G E V * N I * L S Q T Q N L L F G H N K R K S C * I A M N M D - Eco57I Eco57I BpmI AhdI | | | | CTGCGACACCTTCAGCCTGAAGTTATCTATCTTCAGAAAGCCCTTTCTGGTCAAGATGGCAGCATCATCACGACTCTCCAGACCTGGCTTCGACATGACG 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 GACGCTGTGGAAGTCGGACTTCAATAGATAGAAGTCTTTCGGGAAAGACCAGTTCTACCGTCGTAGTAGTGCTGAGAGGTCTGGACCGAAGCTGTACTGC a A T P S A * S Y L S S E S P F W S R W Q H H H D S P D L A S T * R - b L R H L Q P E V I Y L Q K A L S G Q D G S I I T T L Q T W L R H D V - c C D T F S L K L S I F R K P F L V K M A A S S R L S R P G F D M T - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d R R C R * G S T I * R * F A R E P * S P L M M V V R W V Q S R C S - e G A V G E A Q L * R D E S L G K Q D L H C C * * S E G S R A E V H R - f Q S V K L R F N D I K L F G K R T L I A A D D R S E L G P K S M V - AatII DrdII BsgI BpmI EciI | | | | | TCATTCTGATTGTTGGTGCAGATGGTGGTTCTGGAGGTTTGGCAGATAGTGAATCTGAGGCGGAGCGATCTACTAAGAACAAAGAGTGGTGGCAGCGATC 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 AGTAAGACTAACAACCACGTCTACCACCAAGACCTCCAAACCGTCTATCACTTAGACTCCGCCTCGCTAGATGATTCTTGTTTCTCACCACCGTCGCTAG a H S D C W C R W W F W R F G R * * I * G G A I Y * E Q R V V A A I - b I L I V G A D G G S G G L A D S E S E A E R S T K N K E W W Q R S - c S F * L L V Q M V V L E V W Q I V N L R R S D L L R T K S G G S D L - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d T M R I T P A S P P E P P K A S L S D S A S R D V L F L S H H C R D - e * E S Q Q H L H H N Q L N P L Y H I Q P P A I * * S C L T T A A I - f D N Q N N T C I T T R S T Q C I T F R L R L S R S L V F L P P L S - EarI BsaXI MluI | | | TGAAAGGGTTGGAAGAGGACGTGGAGTTGTGGTTGTCGATAGTATGAGGCTAAATGACGATTGGGCGCGTCGAGTTCAGGGACGTGAGTAAGGCCAACGC 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 ACTTTCCCAACCTTCTCCTGCACCTCAACACCAACAGCTATCATACTCCGATTTACTGCTAACCCGCGCAGCTCAAGTCCCTGCACTCATTCCGGTTGCG a * K G W K R T W S C G C R * Y E A K * R L G A S S S G T * V R P T R - b E R V G R G R G V V V V D S M R L N D D W A R R V Q G R E * G Q R - c K G L E E D V E L W L S I V * G * M T I G R V E F R D V S K A N A - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d S L T P L P R P T T T T S L I L S F S S Q A R R T * P R S Y P W R - e Q F P Q F L V H L Q P Q R Y Y S A L H R N P A D L E P V H T L G V - f R F P N S S S T S N H N D I T H P * I V I P R T S N L S T L L A L A - BssSI BssSI MluI | | | GTCTTGCGACATAGCACGAGATACCATGAACCTATCTATTTAGTATATGTCAGATTCTTGCAAACACGAGCACGCGTGTGTACTTTCTAAAaaaaaaaaa 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 CAGAACGCTGTATCGTGCTCTATGGTACTTGGATAGATAAATCATATACAGTCTAAGAACGTTTGTGCTCGTGCGCACACATGAAAGATTTttttttttt a L A T * H E I P * T Y L F S I C Q I L A N T S T R V Y F L K K K K - b V L R H S T R Y H E P I Y L V Y V R F L Q T R A R V C T F * K K K K - c S C D I A R D T M N L S I * Y M S D S C K H E H A C V L S K K K K - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 d T K R C L V L Y W S G I * K T Y T L N K C V R A R T H V K * F F F - e R R A V Y C S I G H V * R N L I H * I R A F V L V R T Y K R F F F F - f D Q S M A R S V M F R D I * Y I D S E Q L C S C A H T S E L F F F - XhoI ApaI KpnI | | | aaaaaaaaaactcgaggggggcccggtacccaatcgg 1401 ---------+---------+---------+------- 1437 ttttttttttgagctccccccgggccatgggttagcc a K K K L E G G P V P N R - b K K N S R G A R Y P I - c K K K T R G G P G T Q S - 1401 ---------+---------+---------+------- 1437 d F F F F E L P A R Y G I P - e F F F S S P P G T G L R - f F F F V R P P G P V W D - Enzymes that do cut: AatII AhdI AlwNI ApaI BamHI BfiI BpmI Bpu1102I BsaXI BsbI BseRI BsgI BsrDI BssHII BssSI BstXI ClaI DraIII DrdI DrdII EarI EciI Eco57I EcoRI FspI KpnI MluI MscI NarI NcoI NruI NspV SanDI SphI XcmI XhoI XmnI Enzymes that do not cut: AceIII AflII ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BclI BglI BglII BplI Bpu10I BsaI BsaBI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrGI Bst1107I BstEII Bsu36I DraI EagI Eco47III EcoNI EcoRV FseI HgiEII HindIII HpaI MfeI NdeI NgoAIV NheI NotI NsiI PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI