(Linear) MAP of: ./Contig638.seq check: 1024 from: 1 to: 812 Contig638 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:47 .. BcgI BplI | EcoRI BssSI StuI| | PstI | BseRI|BsaXI|| | Pfl1108I NarI | | || ||| | | | gctgcagggaATTCGGCACGAGGCCTCCTCCCCGTCAAcggatcgAGTCCACCGTCAACGGCAACGGCGACAAGAAGAACTCTGACCCCTACGAGGGCGC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 cgacgtccctTAAGCCGTGCTCCGGAGGAGGGGCAGTTgcctagcTCAGGTGGCAGTTGCCGTTGCCGCTGTTCTTCTTGAGACTGGGGATGCTCCCGCG a A A G N S A R G L L P V N G S S P P S T A T A T R R T L T P T R A P - b L Q G I R H E A S S P S T D R V H R Q R Q R R Q E E L * P L R G R - c C R E F G T R P P P R Q R I E S T V N G N G D K K N S D P Y E G A - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d A P F E A R P R R G T L P D L G G D V A V A V L L V R V G V L A - e Q L S N P V L G G G R * R I S D V T L P L P S L F F E S G * S P A - f S C P I R C S A E E G D V S R T W R * R C R R C S S S Q G R R P R - Bce83I BsaI BsrDI | BspMI | | | | | CACCATTGCTGCTCTGCGCCTCAAGCCCGTCACATCCGTCGGTGCCACCTCCACCTGCTCCGAGGCCATCGAGACCATGCGCGACAAGGGTTTCGACCAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTGGTAACGACGAGACGCGGAGTTCGGGCAGTGTAGGCAGCCACGGTGGAGGTGGACGAGGCTCCGGTAGCTCTGGTACGCGCTGTTCCCAAAGCTGGTC a P L L L C A S S P S H P S V P P P P A P R P S R P C A T R V S T S - b H H C C S A P Q A R H I R R C H L H L L R G H R D H A R Q G F R P A - c T I A A L R L K P V T S V G A T S T C S E A I E T M R D K G F D Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G G N S S Q A E L G D C G D T G G G G A G L G D L G H A V L T E V L - e V M A A R R R L G T V D T P A V E V Q E S A M S V M R S L P K S W - f W W Q Q E A G * A R * M R R H W R W R S R P W R S W A R C P N R G - Bpu10I EagI AceIII EciI DrdII BstEII BpmI | NotI SacI | | | | | | | | CTCCCCGTCCTCTCCGCCAGCGGAACCAAGCTCGTCGGTCTTGTTACCCTCGGTAACCTCCTGAGCTACATCTCCAGCGGCCGCGCCACGGGCCAGAGCT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GAGGGGCAGGAGAGGCGGTCGCCTTGGTTCGAGCAGCCAGAACAATGGGAGCCATTGGAGGACTCGATGTAGAGGTCGCCGGCGCGGTGCCCGGTCTCGA a S P S S P P A E P S S S V L L P S V T S * A T S P A A A P R A R A - b P R P L R Q R N Q A R R S C Y P R * P P E L H L Q R P R H G P E L - c L P V L S A S G T K L V G L V T L G N L L S Y I S S G R A T G Q S S - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d E G D E G G A S G L E D T K N G E T V E Q A V D G A A A G R A L A - e S G T R E A L P V L S T P R T V R P L R R L * M E L P R A V P W L - f A G R G R R W R F W A R R D Q * G R Y G G S S C R W R G R W P G S S - AatII BsmBI DrdI BplI | | | | CCGTGTCAGACGTCATGTTCGATTTCGCCCGTCTCGACGAGATCGTCACTGACCCCCGCGAGTTCGCCTCCCCCATCAACCCCGGCAAGCGCAGGCAGTT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGCACAGTCTGCAGTACAAGCTAAAGCGGGCAGAGCTGCTCTAGCAGTGACTGGGGGCGCTCAAGCGGAGGGGGTAGTTGGGGCCGTTCGCGTCCGTCAA a P C Q T S C S I S P V S T R S S L T P A S S P P P S T P A S A G S L - b R V R R H V R F R P S R R D R H * P P R V R L P H Q P R Q A Q A V - c V S D V M F D F A R L D E I V T D P R E F A S P I N P G K R R Q F - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G H * V D H E I E G T E V L D D S V G A L E G G G D V G A L A P L - e E T D S T M N S K A R R S S I T V S G R S N A E G M L G P L R L C N - f R T L R * T R N R G D R R S R * Q G G R T R R G W * G R C A C A T - BcgI Bpu10I BcgI AhdI | | | | TGTCGAGATCACAAAGGACACACCCCTCACCACCCTCAGCAAGTTCTTCGAGTGGAACAGTGCTGCTGTTGTAACCGAAAAGTCGGGCGACTCCAAGTCT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACAGCTCTAGTGTTTCCTGTGTGGGGAGTGGTGGGAGTCGTTCAAGAAGCTCACCTTGTCACGACGACAACATTGGCTTTTCAGCCCGCTGAGGTTCAGA a S R S Q R T H P S P P S A S S S S G T V L L L * P K S R A T P S L - b C R D H K G H T P H H P Q Q V L R V E Q C C C C N R K V G R L Q V S - c V E I T K D T P L T T L S K F F E W N S A A V V T E K S G D S K S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d K D L D C L V C G E G G E A L E E L P V T S S N Y G F L R A V G L R - e T S I V F S V G R V V R L L N K S H F L A A T T V S F D P S E L D - f Q R S * L P C V G * W G * C T R R T S C H Q Q Q L R F T P R S W T - BsrDI BseRI BclI NruI | | | | CTGTCCAAGCCCATTGCTGTCGTCACAAAGGTTGACCTCCTCACATGGATGATCAACAAGAAGTTGTAGAGAAAGAAAGAAAACCTCGCGAGAGGATAGG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GACAGGTTCGGGTAACGACAGCAGTGTTTCCAACTGGAGGAGTGTACCTACTAGTTGTTCTTCAACATCTCTTTCTTTCTTTTGGAGCGCTCTCCTATCC a C P S P L L S S Q R L T S S H G * S T R S C R E R K K T S R E D R - b V Q A H C C R H K G * P P H M D D Q Q E V V E K E R K P R E R I G - c L S K P I A V V T K V D L L T W M I N K K L * R K K E N L A R G * E - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d Q G L G N S D D C L N V E E C P H D V L L Q L S L F F V E R S S L - e R D L G M A T T V F T S R R V H I I L L F N Y L F F S F R A L P Y - f E T W A W Q Q R * L P Q G G * M S S * C S T T S F S L F G R S L I P - ScaI DrdI | | AACGAGTACTCATGTTTTCAACGACATTCACGTCTGGCGTTCCAGGATACCTTTTTAGAAAAAGAGATGGATTATTTGGATAAGTTTGTTTGATAGACTG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TTGCTCATGAGTACAAAAGTTGCTGTAAGTGCAGACCGCAAGGTCCTATGGAAAAATCTTTTTCTCTACCTAATAAACCTATTCAAACAAACTATCTGAC a N E Y S C F Q R H S R L A F Q D T F L E K E M D Y L D K F V * * T A - b T S T H V F N D I H V W R S R I P F * K K R W I I W I S L F D R L - c R V L M F S T T F T S G V P G Y L F R K R D G L F G * V C L I D C - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d F S Y E H K * R C E R R A N W S V K K S F S I S * K S L N T Q Y V - e S R T S M N E V V N V D P T G P Y R K L F L S P N N P Y T Q K I S Q - f V L V * T K L S M * T Q R E L I G K * F F L H I I Q I L K N S L S - SnaBI VspI | | CATTTTTGGGCGGTAGACTCAACATCTACATGGCATTTGCGGCGGGAATTTtcTACGTAAATTAAAAATGTCATTAATATAATTGTgtcatccaaaacaa 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GTAAAAACCCGCCATCTGAGTTGTAGATGTACCGTAAACGCCGCCCTTAAAagATGCATTTAATTTTTACAGTAATTATATTAACAcagtaggttttgtt a F L G G R L N I Y M A F A A G I F Y V N * K C H * Y N C V I Q N K - b H F W A V D S T S T W H L R R E F S T * I K N V I N I I V S S K T K - c I F G R * T Q H L H G I C G G N F L R K L K M S L I * L C H P K Q - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d A N K P P L S L M * M A N A A P I K * T F * F H * * Y L Q T M W F L - e M K P R Y V * C R C P M Q P P F K R R L N F I D N I Y N H * G F C - f C K Q A T S E V D V H C K R R S N E V Y I L F T M L I I T D D L V - aaaaaaaaaaaa 801 ---------+-- 812 tttttttttttt a K K K - b K K K - c K K K K - 801 ---------+-- 812 d F F F F - e F F F F - f F F F F - Enzymes that do cut: AatII AceIII AhdI Bce83I BcgI BclI BplI BpmI Bpu10I BsaI BsaXI BseRI BsmBI BspMI BsrDI BssSI BstEII DrdI DrdII EagI EciI EcoRI NarI NotI NruI Pfl1108I PstI SacI ScaI SnaBI StuI VspI Enzymes that do not cut: AflII AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BfiI BglI BglII Bpu1102I BsaBI BsbI BsgI BsiWI BsmI BspEI BspGI BspLU11I BsrBI BsrGI BssHII Bst1107I BstXI Bsu36I ClaI DraI DraIII EarI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NcoI NdeI NgoAIV NheI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RcaI RsrII SacII SalI SanDI SapI SexAI SfiI SgfI SgrAI SmaI SpeI SphI SrfI Sse8387I Sse8647I SspI SwaI Tth111I XbaI XcmI XhoI XmnI