(Linear) MAP of: ./Contig720.seq check: 3414 from: 1 to: 560 Contig720 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:47 .. TTTTTTTTTTTTTTTttcccctttTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCAAAATCGAGCCGAACGCCTCGAAGTGGATTTGCTAGATG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AAAAAAAAAAAAAAAaaggggaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAGTTTTAGCTCGGCTTGCGGAGCTTCACCTAAACGATCTAC a F F F F F F P F F F F F F F F F F F L S Q N R A E R L E V D L L D A - b F F F F F S P F F F F F F F F F F F C L K I E P N A S K W I C * M - c F F F F F P L F F F F F F F F F F F V S K S S R T P R S G F A R C - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d K K K K K G K K K K K K K K K K K K D * F R A S R R S T S K S S - e K K K K K G R K K K K K K K K K K K T E F D L R V G R L P N A L H - f K K K K K E G K K K K K K K K K K K Q R L I S G F A E F H I Q * I - BsrDI EcoRI EcoNI DrdII | | | | CAGCCAACCCTAGTTTCTTTCACCCATTGCCTTCGTGCCCGAACCCAAAACCCTGTGGTCCATTCGTATCAGAATTCCTTTTCGAGGATTCTCAGAACCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTCGGTTGGGATCAAAGAAAGTGGGTAACGGAAGCACGGGCTTGGGTTTTGGGACACCAGGTAAGCATAGTCTTAAGGAAAAGCTCCTAAGAGTCTTGGT a A N P S F F H P L P S C P N P K P C G P F V S E F L F E D S Q N Q - b Q P T L V S F T H C L R A R T Q N P V V H S Y Q N S F S R I L R T R - c S Q P * F L S P I A F V P E P K T L W S I R I R I P F R G F S E P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d A A L G L K K * G N G E H G F G F G Q P G N T D S N R K S S E * F W - e L W G * N R E G M A K T G S G L V R H D M R I L I G K R P N E S G - f C G V R T E K V W Q R R A R V W F G T T W E Y * F E K E L I R L V - Bce83I BpmI BsrBI BseRI | | | | | GATGTCGAGTAACTTTTTCCCACACTTTGTTGATTTATCGCTGTCCGCTCCAGACGCTCTTGAGGAGGCCGTCACGCTGGGCCAGTCGGTTGAGGGAGTC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CTACAGCTCATTGAAAAAGGGTGTGAAACAACTAAATAGCGACAGGCGAGGTCTGCGAGAACTCCTCCGGCAGTGCGACCCGGTCAGCCAACTCCCTCAG a M S S N F F P H F V D L S L S A P D A L E E A V T L G Q S V E G V - b C R V T F S H T L L I Y R C P L Q T L L R R P S R W A S R L R E S - c D V E * L F P T L C * F I A V R S R R S * G G R H A G P V G * G S R - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d I D L L K K G C K T S K D S D A G S A R S S A T V S P W D T S P T - e S T S Y S K G V S Q Q N I A T R E L R E Q P P R * A P G T P Q P L - f L H R T V K E W V K N I * R Q G S W V S K L L G D R Q A L R N L S D - BglII NcoI DrdII EagI BsaBI| | | | || GTCGCTCTCGCCCATGGCTCGGACGAAACCGCAGAGGGCGTAGACGTGGTTCTCGCCCTGGATGGCACGGCCGTTCTCGTCAACCTTGGCGATGGAGATC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CAGCGAGAGCGGGTACCGAGCCTGCTTTGGCGTCTCCCGCATCTGCACCAAGAGCGGGACCTACCGTGCCGGCAAGAGCAGTTGGAACCGCTACCTCTAG a V A L A H G S D E T A E G V D V V L A L D G T A V L V N L G D G D L - b S L S P M A R T K P Q R A * T W F S P W M A R P F S S T L A M E I - c R S R P W L G R N R R G R R R G S R P G W H G R S R Q P W R W R S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d T A R A W P E S S V A S P T S T T R A R S P V A T R T L R P S P S - e R R E R G H S P R F R L P R L R P E R G P H C P R E R * G Q R H L D - f D S E G M A R V F G C L A Y V H N E G Q I A R G N E D V K A I S I - BspGI BsgI DrdI SacII | | | | TGGACAGAGCCGTGATCCTTGGCCTTGATGATGCGGTTGGTGGCGCTGCACTTGCGGGGGACGTAAAGGTCCACAATCTCGCCGCGGTCGTTCTCCATTT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACCTGTCTCGGCACTAGGAACCGGAACTACTACGCCAACCACCGCGACGTGAACGCCCCCTGCATTTCCAGGTGTTAGAGCGGCGCCAGCAAGAGGTAAA a D R A V I L G L D D A V G G A A L A G D V K V H N L A A V V L H F - b W T E P * S L A L M M R L V A L H L R G T * R S T I S P R S F S I L - c G Q S R D P W P * * C G W W R C T C G G R K G P Q S R R G R S P F - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R S L A T I R P R S S A T P P A A S A P S T F T W L R A A T T R W K - e P C L R S G Q G Q H H P Q H R Q V Q P P R L P G C D R R P R E G N - f Q V S G H D K A K I I R N T A S C K R P V Y L D V I E G R D N E M - BssSI EcoRI | | TGGCTGTTTGGGGGGGTGGTTTTGGGTGGTTTTTGAGTGGTAGTGCCTCGTGCCGAATTC 501 ---------+---------+---------+---------+---------+---------+ 560 ACCGACAAACCCCCCCACCAAAACCCACCAAAAACTCACCATCACGGAGCACGGCTTAAG a G C L G G W F W V V F E W * C L V P N - b A V W G G G F G W F L S G S A S C R I - c W L F G G V V L G G F * V V V P R A E F - 501 ---------+---------+---------+---------+---------+---------+ 560 d P Q K P P H N Q T T K S H Y H R T G F E - e Q S N P P T T K P P K Q T T T G R A S N - f K A T Q P P P K P H N K L P L A E H R I - Enzymes that do cut: Bce83I BglII BpmI BsaBI BseRI BsgI BspGI BsrBI BsrDI BssSI DrdI DrdII EagI EcoNI EcoRI NcoI SacII Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BcgI BclI BfiI BglI BplI Bpu10I Bpu1102I BsaI BsaXI BsbI BsiWI BsmI BsmBI BspEI BspLU11I BspMI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII EarI EciI Eco47III Eco57I EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI