BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_A01_A01ZS5.seq
(912 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DR2565 DR2565 COG0247 [C] Fe-S oxidoreductases 36 0.080
MLR2363 mlr2363 COG0515 [T] Serine/threonine protein kinases 35 0.23
CC1847 CC1847 COG0513 [L] 3 Superfamily II DNA and RNA helicases 32 2.0
PA0428 PA0428 COG0513 [L] 3 Superfamily II DNA and RNA helicases 32 2.0
MLR2412 mlr2412 COG2885 [M] Outer membrane protein and related ... 31 3.4
CYNX cynX COG2807 [P] Cyanate permease 30 7.5
ZCYNX ZcynX COG2807 [P] Cyanate permease 29 9.8
>DR2565 DR2565 COG0247 [C] Fe-S oxidoreductases
Length = 1132
Score = 36.2 bits (82), Expect = 0.080
Identities = 25/79 (31%), Positives = 31/79 (38%), Gaps = 4/79 (5%)
Frame = -1
Query: 360 GRK----KGKQPPAPEGHAPAQRRAEGARTKPAIPPPPAHGRETKKKSDSREQVILAPAS 193
GRK K K P A EG AP Q + +PA+ P P G Q APA
Sbjct: 986 GRKAWNPKAKTPAAAEGSAPVQEAVQEVAPQPAVAPAPVQGDIQDPLPQPPVQQASAPAQ 1045
Query: 192 TPNARATCDDDRAEEARPP 136
+ + +AE A P
Sbjct: 1046 SGERKKWNPKAKAEAAPAP 1064
>MLR2363 mlr2363 COG0515 [T] Serine/threonine protein kinases
Length = 857
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/71 (33%), Positives = 29/71 (40%)
Frame = -1
Query: 357 RKKGKQPPAPEGHAPAQRRAEGARTKPAIPPPPAHGRETKKKSDSREQVILAPASTPNAR 178
R + PPA E PAQ + KPA PPP A + T S S P+ P A
Sbjct: 565 RPEASPPPASESRLPAQPTSPPV--KPAAPPPTA-SQPTPPTSPSEPTQTAQPSQQPQAP 621
Query: 177 ATCDDDRAEEA 145
T + E A
Sbjct: 622 VTTRPENTEVA 632
>CC1847 CC1847 COG0513 [L] 3 Superfamily II DNA and RNA helicases
Length = 517
Score = 31.6 bits (70), Expect = 2.0
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = -1
Query: 369 PGRGRKKGKQPPAPEGHAPAQRRAEGARTKPAIPPPPAHGRETKKKSDSREQVILAPAST 190
P RGR +G++ APA+ AE T P A R +++ RE+ A A
Sbjct: 409 PARGRGRGRERAEETVEAPAEAVAEIVDT-----PAMAEERPARERRPRREREPKAAAPA 463
Query: 189 PNARATCDDDRAEEARPPI 133
P A RAE P+
Sbjct: 464 PTAVEAERPARAERPERPV 482
>PA0428 PA0428 COG0513 [L] 3 Superfamily II DNA and RNA helicases
Length = 639
Score = 31.6 bits (70), Expect = 2.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 366 GRGRKKGKQPPAPEGHAPAQRRAEGARTKPAIPPPPAHGRETKKK 232
G+G+ +GK A +G A Q +G KP P GRE +
Sbjct: 534 GQGQARGKSQGAAQGGARGQGAGQGKAKKPRAGKPRGQGRENASR 578
>MLR2412 mlr2412 COG2885 [M] Outer membrane protein and related
peptidoglycan-associated
Length = 754
Score = 30.8 bits (68), Expect = 3.4
Identities = 26/75 (34%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = -1
Query: 357 RKKGKQPPAPEGHAPAQRRAEGARTKPAIPPPPAH-GRETKKKSDSREQVILAPASTPNA 181
RKK APA + G T+PA P GR K K D +++ APA TP A
Sbjct: 204 RKKKSDQQQQTEQAPAAQAPAG-ETQPANDNQPVKPGR--KHKQDQQKEAPAAPAVTPEA 260
Query: 180 RATCDDDRAEEARPP 136
T + A +A P
Sbjct: 261 APTPKEAPAGQATTP 275
>CYNX cynX COG2807 [P] Cyanate permease
Length = 384
Score = 29.6 bits (65), Expect = 7.5
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 269 GMAGFVLAPSAL--LWAGACPSGAGGCFP 349
G GF+ P L LWA C G GG FP
Sbjct: 274 GFCGFIWLPMQLPVLWAMVCGLGLGGAFP 302
>ZCYNX ZcynX COG2807 [P] Cyanate permease
Length = 384
Score = 29.3 bits (64), Expect = 9.8
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 269 GMAGFVLAPSAL--LWAGACPSGAGGCFP 349
G GF+ P L LWA C G GG FP
Sbjct: 274 GFCGFIWLPLQLPVLWAMVCGLGLGGAFP 302
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21322638
Number of Sequences: 78847
Number of extensions: 258355
Number of successful extensions: 858
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of query: 304
length of database: 26,228,252
effective HSP length: 49
effective length of query: 254
effective length of database: 22,364,749
effective search space: 5680646246
effective search space used: 5680646246
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)