BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_A06_A11ZS5.seq
         (963 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ML1556 ML1556  COG0532 [J] Translation initiation factor 2 (GTPa...    33  0.72
VNG1142G VNG1142G  COG0148 [G] Enolase                                 30  6.1
RV2839C Rv2839c  COG0532 [J] Translation initiation factor 2 (GT...    30  8.0

>ML1556 ML1556  COG0532 [J] Translation initiation factor 2 (GTPase)
          Length = 924

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 24/70 (34%), Positives = 26/70 (36%), Gaps = 14/70 (20%)
 Frame = +1

Query: 694 GAGGCGCPVVLLLEVGG---------AWEGRGXWWVAGQRGGGKHAGDA-----GAVCGX 831
           G G  G PV    + GG         A  G G     G+ GGG H G       G   G 
Sbjct: 231 GGGRPGAPVGGRSDAGGGNYRGGGVGALPGGGSGGFRGRPGGGGHGGGGRPGQRGGAAGA 290

Query: 832 LSRPMGGPRR 861
             RP G PRR
Sbjct: 291 FGRPGGAPRR 300



>VNG1142G VNG1142G  COG0148 [G] Enolase
          Length = 398

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 29/83 (34%), Positives = 35/83 (41%), Gaps = 1/83 (1%)
 Frame = +1

Query: 610 ADDSSDLWRPVAVSAHAVVPCRRRASGWGAGGCGCPVVLLLEVGGAWEGRGXWWVAGQ-R 786
           ADD++D     AV A+  V     A+   A   G  V     +GGA  GR      G   
Sbjct: 87  ADDTTDF---SAVGANVAVATSMAAAKAAADVLG--VHTYQHLGGALRGRNFPVPLGNVL 141

Query: 787 GGGKHAGDAGAVCGXLSRPMGGP 855
           GGG HA DA A+   L    G P
Sbjct: 142 GGGAHAADATAIQEFLVAATGAP 164



>RV2839C Rv2839c  COG0532 [J] Translation initiation factor 2
           (GTPase)
          Length = 900

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/40 (42%), Positives = 18/40 (44%)
 Frame = +1

Query: 742 GAWEGRGXWWVAGQRGGGKHAGDAGAVCGXLSRPMGGPRR 861
           GA  G G     G  GGG+  G  G   G   RP G PRR
Sbjct: 238 GAAPGTGFRGRPGGGGGGR-PGQRGGAAGAFGRPGGAPRR 276



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27788303
Number of Sequences: 78847
Number of extensions: 381266
Number of successful extensions: 1167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of query: 321
length of database: 26,228,252
effective HSP length: 49
effective length of query: 271
effective length of database: 22,364,749
effective search space: 6060846979
effective search space used: 6060846979
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)