BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_B01_C01ZS5.seq
(889 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YNL244C YNL244c COG0023 [J] Translation initiation factor (SUI1) 124 2e-28
CDA4245 CDa4245 COG0023 [J] Translation initiation factor (SUI1) 122 8e-28
TA1263B Ta1263b COG0023 [J] Translation initiation factor (SUI1) 44 4e-04
TVN0332 TVN0332 COG0023 [J] Translation initiation factor (SUI1) 44 5e-04
VNG2584C VNG2584C COG0023 [J] Translation initiation factor (SU... 43 8e-04
SLL0546 sll0546 COG0023 [J] Translation initiation factor (SUI1) 39 0.009
ZYCIH ZyciH COG0023 [J] Translation initiation factor (SUI1) 33 0.66
TP0230 TP0230 COG1198 [L] Primosomal protein N' (replication fa... 32 1.1
YCIH yciH COG0023 [J] Translation initiation factor (SUI1) 31 2.5
RP682 RP682 COG0084 [L] Mg-dependent DNase 31 2.5
NMA1964 NMA1964 COG0334 [E] Glutamate dehydrogenase/leucine deh... 30 5.6
NMB1710 NMB1710 COG0334 [E] Glutamate dehydrogenase/leucine deh... 29 9.5
>YNL244C YNL244c COG0023 [J] Translation initiation factor (SUI1)
Length = 108
Score = 124 bits (312), Expect = 2e-28
Identities = 59/106 (55%), Positives = 82/106 (76%), Gaps = 1/106 (0%)
Frame = +3
Query: 219 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFC 398
+FDPFA+ +++ + NY+H+R+QQRNGRK+LTTVQG+ ++Y +ILK LKK+F
Sbjct: 8 SFDPFADTGDDETA----TSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFA 63
Query: 399 CNGTVVQDPELGQVIQLQGDQRKNVATFLV-QAGLAKKESIKIHGF 533
CNG +V+DPE+G++IQLQGDQR V F++ Q GL KK +IKIHGF
Sbjct: 64 CNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKK-NIKIHGF 108
>CDA4245 CDa4245 COG0023 [J] Translation initiation factor (SUI1)
Length = 109
Score = 122 bits (306), Expect = 8e-28
Identities = 61/110 (55%), Positives = 77/110 (69%)
Frame = +3
Query: 204 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDL 383
+Q AFDPFA+ + A NY+H+R+QQRNGRK+LTTVQG+ +Y KILK L
Sbjct: 4 IQNLNAFDPFADTGDSE----AQPTNYIHIRIQQRNGRKTLTTVQGVPNEYDLKKILKVL 59
Query: 384 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGLAKKESIKIHGF 533
KK+F CNG +V+D ELG+VIQLQGDQR V+ FL K++IKIHGF
Sbjct: 60 KKDFACNGNIVKDDELGEVIQLQGDQRVKVSEFLTAQLQLPKKNIKIHGF 109
>TA1263B Ta1263b COG0023 [J] Translation initiation factor (SUI1)
Length = 99
Score = 43.9 bits (102), Expect = 4e-04
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 285 VHVRVQQRNGRKSLTTVQGLK-KDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 461
V + V +R K +T ++G+ K KI K+LKK+ GTV + G++I+LQGD
Sbjct: 26 VKIMVDKRRYGKFVTIIEGIDPKTEDIEKIAKELKKKVASGGTVKE----GRIIELQGDH 81
Query: 462 RKNVATFLVQAG 497
R+ V +L G
Sbjct: 82 RQEVKKYLEDMG 93
>TVN0332 TVN0332 COG0023 [J] Translation initiation factor (SUI1)
Length = 100
Score = 43.5 bits (101), Expect = 5e-04
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 285 VHVRVQQRNGRKSLTTVQGLK-KDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 461
V + V +R K +T ++G+ K KI K+LKK+ GTV + G++I+LQGD
Sbjct: 26 VKIVVDKRRYGKFVTIIEGIDPKIEDIEKIAKELKKKVASGGTVKE----GRIIELQGDH 81
Query: 462 RKNVATFLVQAG 497
R+ V FL G
Sbjct: 82 RQEVKKFLEDMG 93
>VNG2584C VNG2584C COG0023 [J] Translation initiation factor (SUI1)
Length = 97
Score = 42.7 bits (99), Expect = 8e-04
Identities = 26/78 (33%), Positives = 39/78 (49%), Gaps = 1/78 (1%)
Frame = +3
Query: 267 AGSKNYVHVRVQQRNGRKSLTTVQGLK-KDYSYNKILKDLKKEFCCNGTVVQDPELGQVI 443
A + +R+ +R K +T ++G KD + + DLK +F C GT V+D E I
Sbjct: 21 AKESQQIEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGT-VEDGE----I 75
Query: 444 QLQGDQRKNVATFLVQAG 497
+LQG+ V FL G
Sbjct: 76 ELQGNHSGRVEDFLRNKG 93
>SLL0546 sll0546 COG0023 [J] Translation initiation factor (SUI1)
Length = 111
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 288 HVRVQQ-RNGRK--SLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 458
+VR+Q R+GRK ++T V GL+ + L K FC +G +++ +++QGD
Sbjct: 35 NVRIQATRSGRKGKTVTVVSGLQLSAMGQQALLKALKSFCGSGGTLKE----DCVEIQGD 90
Query: 459 QRKNVATFLVQAGLAKKES 515
QR+ + +L++ G K S
Sbjct: 91 QREKILAYLLKQGYKAKIS 109
>ZYCIH ZyciH COG0023 [J] Translation initiation factor (SUI1)
Length = 109
Score = 33.1 bits (74), Expect = 0.66
Identities = 29/91 (31%), Positives = 43/91 (46%), Gaps = 4/91 (4%)
Frame = +3
Query: 249 EDSGAGAGSKNYVHVRVQ-QRNGRKS--LTTVQGLK-KDYSYNKILKDLKKEFCCNGTVV 416
E A SK VR+Q Q +GRK + + G+ D K+ +LKK+ C G V
Sbjct: 20 EPKAAPVRSKGDGVVRIQRQTSGRKGKGVCLITGIDLDDAELTKLAAELKKKCGCGGAVK 79
Query: 417 QDPELGQVIQLQGDQRKNVATFLVQAGLAKK 509
VI++QGD+R + + L G+ K
Sbjct: 80 DG-----VIEIQGDKRDLLKSLLEAKGMKVK 105
>TP0230 TP0230 COG1198 [L] Primosomal protein N' (replication
factor Y) - superfamily I
Length = 657
Score = 32.3 bits (72), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 662 HPRHLDWHRCVDANCPLPWFVCAPSMAVW 748
H R + +RC DANCP PS+ W
Sbjct: 268 HARQVAMYRCADANCPFVMGSATPSVEAW 296
>YCIH yciH COG0023 [J] Translation initiation factor (SUI1)
Length = 109
Score = 31.2 bits (69), Expect = 2.5
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +3
Query: 291 VRVQ-QRNGRKS--LTTVQGLK-KDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 458
VR+Q Q +GRK + + G+ D K+ +LKK+ C G V VI++QGD
Sbjct: 34 VRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGD 88
Query: 459 QRKNVATFLVQAGLAKK 509
+R + + L G+ K
Sbjct: 89 KRDLLKSLLEAKGMKVK 105
>RP682 RP682 COG0084 [L] Mg-dependent DNase
Length = 293
Score = 31.2 bits (69), Expect = 2.5
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +2
Query: 53 VVSSRAAFLLLPAFAVCGSLHRTSSHIKTINRACLF 160
++ S LL F+ CGS+ +S +IKT N +C F
Sbjct: 2 LIDSHCHLNLLTNFSSCGSITISSKNIKTTNSSCFF 37
>NMA1964 NMA1964 COG0334 [E] Glutamate dehydrogenase/leucine
dehydrogenase
Length = 444
Score = 30.0 bits (66), Expect = 5.6
Identities = 30/112 (26%), Positives = 49/112 (42%), Gaps = 13/112 (11%)
Frame = +3
Query: 264 GAGSKNYVHVRVQQRN----GRKSLTTVQGLKKDYSYNKILKDLKKEFCC---NGTVV-- 416
G G + +Q RN G++ L + G Y+ K ++ K NG V+
Sbjct: 209 GYGCVYFAQAMLQTRNDSFEGKRVLISGSGNVAQYAAEKAIQLGAKVLTVSDSNGFVLFP 268
Query: 417 ----QDPELGQVIQLQGDQRKNVATFLVQAGLAKKESIKIHGF*ATHKCPCA 560
+ +L +I+L+ +R+ VAT+ + GL E+ K G A PCA
Sbjct: 269 DSGMSEAQLAALIELKEVRRERVATYAKEQGLQYFENQKPWGVAAEIALPCA 320
>NMB1710 NMB1710 COG0334 [E] Glutamate dehydrogenase/leucine
dehydrogenase
Length = 444
Score = 29.3 bits (64), Expect = 9.5
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Frame = +3
Query: 264 GAGSKNYVHVRVQQRN----GRKSLTTVQGLKKDYSYNKILKDLKKEFCC---NGTVV-- 416
G G + +Q RN G++ L + G Y+ K ++ K NG V+
Sbjct: 209 GYGCVYFAQAMLQTRNDSFEGKRVLISGSGNVAQYAAEKAIQLGAKVLTVSDSNGFVLFP 268
Query: 417 ----QDPELGQVIQLQGDQRKNVATFLVQAGLAKKESIKIHGF*ATHKCPCA 560
+ +L +I+L+ +R+ VAT+ + GL E K G A PCA
Sbjct: 269 DSGMTEAQLAALIELKEVRRERVATYAKEQGLQYFEKQKPWGVAAEIALPCA 320
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34665438
Number of Sequences: 78847
Number of extensions: 628451
Number of successful extensions: 1675
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of query: 296
length of database: 26,228,252
effective HSP length: 49
effective length of query: 246
effective length of database: 22,364,749
effective search space: 5501728254
effective search space used: 5501728254
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)