BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_B07_C13ZS5.seq
         (757 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RNE rne  COG1530 [J] Ribonucleases G and E                             33  0.54
ZRNE Zrne  COG1530 [J] Ribonucleases G and E                           33  0.71
DR0071 DR0071  COG0760 [O] Parvulin-like peptidyl-prolyl isomerase     30  4.6

>RNE rne  COG1530 [J] Ribonucleases G and E
          Length = 1061

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 22/87 (25%), Positives = 35/87 (39%)
 Frame = -1

Query: 532 KSDEKGPREQRRRGRGAHNKQRANEKRTPREATKEGSHDRDXXXXXXXXXXXXXXXXXXX 353
           K++ K  R+Q RR    +N++  NE+R  R    EGS +R+                   
Sbjct: 597 KAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRES 656

Query: 352 XKQKPQTSKRAGAQATKGTRGEGTPKR 272
            +Q   T K   A   +  R E + +R
Sbjct: 657 RQQAEVTEKARTADEQQAPRRERSRRR 683



>ZRNE Zrne  COG1530 [J] Ribonucleases G and E
          Length = 1061

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 22/87 (25%), Positives = 35/87 (39%)
 Frame = -1

Query: 532 KSDEKGPREQRRRGRGAHNKQRANEKRTPREATKEGSHDRDXXXXXXXXXXXXXXXXXXX 353
           K++ K  R+Q RR    +N++  NE+R  R    EGS +R+                   
Sbjct: 597 KAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETREG 656

Query: 352 XKQKPQTSKRAGAQATKGTRGEGTPKR 272
            +Q   T K   A   +  R E + +R
Sbjct: 657 RQQAEVTEKARTADEQQAPRRERSRRR 683



>DR0071 DR0071  COG0760 [O] Parvulin-like peptidyl-prolyl isomerase
          Length = 677

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 333 QAKGRARKQPKVQGGRAPPKEKNPPLFR--GTLPREKPPP 220
           QAK   R+ PK +  R   +E+ PP  R    LPR +P P
Sbjct: 612 QAKPSRRRLPKPKRPRRRRRERRPPQMRREAALPRHRPSP 651



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21000121
Number of Sequences: 78847
Number of extensions: 340362
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of query: 252
length of database: 26,228,252
effective HSP length: 49
effective length of query: 202
effective length of database: 22,364,749
effective search space: 4517679298
effective search space used: 4517679298
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)