BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_B12_C23ZS5.seq
(924 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PA1973 PA1973 COG1025 [O] Secreted/periplasmic Zn-dependent pep... 35 0.24
PA3140 PA3140 COG1555 [L] DNA uptake protein and related DNA-bi... 32 2.0
PA5037_2 PA5037_2 COG3266 [S] Uncharacterized BCR 31 2.6
DR0479 DR0479 COG0744 [M] Membrane carboxypeptidase (penicillin... 30 4.5
MLL1678 mll1678 COG1172 [G] Ribose/xylose/arabinose/galactoside... 30 4.5
DAMX damX COG3266 [S] Uncharacterized BCR 30 4.5
PAB0119 PAB0119 COG2182 [G] Maltose-binding periplasmic protein... 30 5.8
RV2850C_2 Rv2850c_2 COG1240 [H] Mg-chelatase subunit ChlD 30 7.6
ZDAMX ZdamX COG3266 [S] Uncharacterized BCR 30 7.6
>PA1973 PA1973 COG1025 [O] Secreted/periplasmic Zn-dependent
peptidases, insulinase-lik
Length = 775
Score = 34.7 bits (78), Expect = 0.24
Identities = 30/87 (34%), Positives = 41/87 (46%)
Frame = +2
Query: 521 AVAPVKKVSRPVASKARSFVGSTPLPVTAAAPGVKKTTXASTLRAKRGMGEPXRQVPXPI 700
+VAPV + P+A++ ++ PLP +AAA G A LR R G P R +
Sbjct: 410 SVAPVA-AAPPLAAQRHAWRFELPLPPSAAAEG------ALFLRW-RFPGVPARSRFLAL 461
Query: 701 RATAXPX*STQSLGGVQWVYPSLGXDW 781
R P LGGV+ +LG DW
Sbjct: 462 RQALRPLCGQARLGGVEMGLEALGEDW 488
>PA3140 PA3140 COG1555 [L] DNA uptake protein and related
DNA-binding proteins
Length = 109
Score = 31.6 bits (70), Expect = 2.0
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Frame = +2
Query: 494 KAPLYLPATAVAPVKKVSRPVASKARSFVGSTPLPVTAAAPG----VKKTTXASTLRAKR 661
K+ L L A P + PVA +TP T +PG + A+ +R
Sbjct: 5 KSALLLILFACLPFSASAAPVAVAKNPLAATTP--ATTVSPGEQVNINTVDEAALIRGLN 62
Query: 662 GMGEPXRQVPXPIRATAXPX*STQSLGGVQWVYPSL 769
G+GE + RA P S L V+ V P+L
Sbjct: 63 GVGEAKARAILEYRAAHGPFVSVDQLLEVKGVGPAL 98
>PA5037_2 PA5037_2 COG3266 [S] Uncharacterized BCR
Length = 303
Score = 31.2 bits (69), Expect = 2.6
Identities = 18/44 (40%), Positives = 20/44 (44%)
Frame = +2
Query: 485 PAXKAPLYLPATAVAPVKKVSRPVASKARSFVGSTPLPVTAAAP 616
P AP PA A AP K P ASK + + P P AA P
Sbjct: 162 PVASAPASKPAPAPAPAK----PAASKPATTAAAKPAPAPAAKP 201
>DR0479 DR0479 COG0744 [M] Membrane carboxypeptidase
(penicillin-binding protein)
Length = 873
Score = 30.4 bits (67), Expect = 4.5
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Frame = +3
Query: 3 GPRSAAIXHVXHRCSPGSPSPAGTLTSSAVSRKTASPRRPLQPPKNSAAMASTME----- 167
G A + R P SP L S +T PRRPL PP +T
Sbjct: 743 GRSPAPLRRRTRRTLPRQTSPRRALPS-----RTCRPRRPLSPPPRRPRPGATRRANRRR 797
Query: 168 -GVPIATP----PRPHL-----TSMLLSRRPVLIPSVP 251
P AT PR L T LSRRPV P P
Sbjct: 798 TSPPSATRCPTCPRRRLSRCPATPRPLSRRPVTPPGRP 835
>MLL1678 mll1678 COG1172 [G] Ribose/xylose/arabinose/galactoside
ABC-type transport syst
Length = 316
Score = 30.4 bits (67), Expect = 4.5
Identities = 28/85 (32%), Positives = 39/85 (44%), Gaps = 2/85 (2%)
Frame = -3
Query: 325 GAGHRRRRAAFSMVDTLEVVNKWAPGTDGIST--GRLDRSIDVRCGRGGVAMGTPSMVDA 152
G G+R R A S +DT VV + G+S G L + + +MG ++ +
Sbjct: 193 GIGNRERAAYLSGIDTRRVVMIAFAVSGGLSAFGGVL---LAGYASKAAQSMGDAYLLPS 249
Query: 151 IAAEFLGGCSGLLGEAVFLETALEV 77
IAA LGG S L G +L T V
Sbjct: 250 IAAVVLGGTSILGGRGSYLGTVAGV 274
>DAMX damX COG3266 [S] Uncharacterized BCR
Length = 428
Score = 30.4 bits (67), Expect = 4.5
Identities = 24/94 (25%), Positives = 37/94 (38%), Gaps = 5/94 (5%)
Frame = +2
Query: 482 RPAXKAPLYLPATAVAPVKKVSRPVA-----SKARSFVGSTPLPVTAAAPGVKKTTXAST 646
RPA + + P A VK +PVA ++ + V ST P + P K+T +
Sbjct: 255 RPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAP 314
Query: 647 LRAKRGMGEPXRQVPXPIRATAXPX*STQSLGGV 748
+ Q P + TA P ++ G V
Sbjct: 315 V-----------QTASPAQTTATPAAGAKTAGNV 337
>PAB0119 PAB0119 COG2182 [G] Maltose-binding periplasmic
proteins/domains
Length = 453
Score = 30.0 bits (66), Expect = 5.8
Identities = 22/69 (31%), Positives = 34/69 (48%), Gaps = 11/69 (15%)
Frame = -3
Query: 208 DVRCGRGGVAM------GTPSMVDAIAAEFLGGCSGLLGEAVF-----LETALEVSVPAG 62
+ CG G V + + ++A E++ C + E VF LE AL+V++PAG
Sbjct: 72 EAECGSGKVVIWHNMQPNELQVFQSLAEEYMAMCPDV--EIVFEQKPDLENALKVAIPAG 129
Query: 61 EGLPGLHRW 35
+G P L W
Sbjct: 130 QG-PDLFIW 137
>RV2850C_2 Rv2850c_2 COG1240 [H] Mg-chelatase subunit ChlD
Length = 309
Score = 29.6 bits (65), Expect = 7.6
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Frame = +3
Query: 48 PGSPSPAGTLTSSAVSRKTASPRRPLQPP-KNSAAMASTMEGVPIATPPR----PHLTSM 212
PG+PS G S + S RP PP K A + GV P R + +
Sbjct: 19 PGAPSSMGDDPPRPASPRLRSSPRPSAPPSKIFRTRALRVPGVGTGAPGRRSRARNASGS 78
Query: 213 LLSRRPVLIPSVPGAHLFTT 272
+++ V P G HLF T
Sbjct: 79 VVAAAEVSDPDAHGLHLFAT 98
>ZDAMX ZdamX COG3266 [S] Uncharacterized BCR
Length = 428
Score = 29.6 bits (65), Expect = 7.6
Identities = 24/94 (25%), Positives = 37/94 (38%), Gaps = 5/94 (5%)
Frame = +2
Query: 482 RPAXKAPLYLPATAVAPVKKVSRPVA-----SKARSFVGSTPLPVTAAAPGVKKTTXAST 646
RPA + + P A VK +PVA ++ + V ST P + P K+T +
Sbjct: 255 RPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAP 314
Query: 647 LRAKRGMGEPXRQVPXPIRATAXPX*STQSLGGV 748
+ Q P + TA P ++ G V
Sbjct: 315 V-----------QTASPAQTTATPAAGGKTAGNV 337
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39612478
Number of Sequences: 78847
Number of extensions: 784490
Number of successful extensions: 2795
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2791
length of query: 308
length of database: 26,228,252
effective HSP length: 49
effective length of query: 258
effective length of database: 22,364,749
effective search space: 5770105242
effective search space used: 5770105242
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)