BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_C03_E05ZS5.seq
(914 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VC0336 VC0336 COG0696 [G] Phosphoglyceromutase 114 2e-25
SLR1945 slr1945 COG0696 [G] Phosphoglyceromutase 108 2e-23
GPMI gpmI COG0696 [G] Phosphoglyceromutase 107 4e-23
ZYIBO ZyibO COG0696 [G] Phosphoglyceromutase 107 4e-23
PA5131 PA5131 COG0696 [G] Phosphoglyceromutase 105 1e-22
BH3557 BH3557 COG0696 [G] Phosphoglyceromutase 103 4e-22
VNG1887G VNG1887G COG0696 [G] Phosphoglyceromutase 98 2e-20
BS_PGM BS_pgm COG0696 [G] Phosphoglyceromutase 98 2e-20
MPN628 MPN628 COG0696 [G] Phosphoglyceromutase 98 2e-20
JHP0908 jhp0908 COG0696 [G] Phosphoglyceromutase 94 2e-19
HP0974 HP0974 COG0696 [G] Phosphoglyceromutase 94 2e-19
MG430 MG430 COG0696 [G] Phosphoglyceromutase 92 2e-18
CJ0434 Cj0434 COG0696 [G] Phosphoglyceromutase 84 3e-16
UU182 UU182 COG0696 [G] Phosphoglyceromutase 73 6e-13
CT385 CT385 COG0537 [F] 7 Diadenosine tetraphosphate (Ap4A) hyd... 31 2.6
PA4138 PA4138 COG0162 [J] Tyrosyl-tRNA synthetase 31 3.4
TM0312 TM0312 COG0673 [R] Predicted dehydrogenases and related ... 31 3.4
APE2208 APE2208 COG0630 [N] Predicted ATPases involved in pili ... 30 4.4
CC0922_1 CC0922_1 COG0318 [I] Acyl-CoA synthetases (AMP-forming... 30 5.8
CDA7747 CDa7747 COG0515 [T] Serine/threonine protein kinases 30 7.5
RV2888C Rv2888c COG0154 [J] Asp-tRNAAsn/Glu-tRNAGln amidotransf... 30 7.5
CC0905 CC0905 COG1766 [N] Flagellar biosynthesis/type III secre... 29 9.8
RPOB rpoB COG0085 [K] DNA-directed RNA polymerase beta subunit/... 29 9.8
ZRPOB ZrpoB COG0085 [K] DNA-directed RNA polymerase beta subuni... 29 9.8
BS_YWBO BS_ywbO COG2761 [Q] Predicted dithiol-disulfide isomera... 29 9.8
TM0547_1 TM0547_1 COG0460 [E] Homoserine dehydrogenase 29 9.8
CJ0478 Cj0478 COG0085 [K] DNA-directed RNA polymerase beta subu... 29 9.8
>VC0336 VC0336 COG0696 [G] Phosphoglyceromutase
Length = 510
Score = 114 bits (285), Expect = 2e-25
Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 5/157 (3%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K +A+V+LDGWG + N I+ A+TPVMDSL P L+ A G VGLP D MG
Sbjct: 5 KPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMG 61
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDKGT-----LHLIGLL 471
NSEVGH +GAGRI Q + A+ G+ ++ + + DK +HL+GL+
Sbjct: 62 NSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNK---VLVAAIDKAVAAGKAVHLMGLM 118
Query: 472 SDGGVHSRLDQVQLIVKGASERGAKRIRLHILTDGRD 582
S GGVHS D + V+ A+ RGA++I LH DGRD
Sbjct: 119 SPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRD 155
>SLR1945 slr1945 COG0696 [G] Phosphoglyceromutase
Length = 532
Score = 108 bits (269), Expect = 2e-23
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Frame = +1
Query: 133 VAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNS 312
V +V+LDGWG + N I A TP+MDSL P LV G VGLP MGNS
Sbjct: 9 VVLVILDGWGYRPDTRANAIAQANTPIMDSLIAAYPNT--LVNTSGKDVGLPKGQ-MGNS 65
Query: 313 EVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFD--KGTLHLIGLLSDGGV 486
EVGH LGAGR+ Q + A+ G ++++ + + +G LHLIGL SDGGV
Sbjct: 66 EVGHLNLGAGRVVPQELVRISDAIEDGTFFDNQALIEVCQRVRDRRGKLHLIGLCSDGGV 125
Query: 487 HSRLDQVQLIVKGASERGAKRIRLHILTDGRD 582
HS +D + ++ A +G ++ +H +TDGRD
Sbjct: 126 HSHIDHLLGLIDLAKLQGISQLCIHAITDGRD 157
>GPMI gpmI COG0696 [G] Phosphoglyceromutase
Length = 514
Score = 107 bits (266), Expect = 4e-23
Identities = 67/157 (42%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K + +V+LDG+G Q N I A+TPVMD+L P L+ A G VGLP D MG
Sbjct: 6 KPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMG 62
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDKG-----TLHLIGLL 471
NSEVGH LGAGRI Q +D + + + + + DK +H++GLL
Sbjct: 63 NSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANP---VLTGAVDKAKNAGKAVHIMGLL 119
Query: 472 SDGGVHSRLDQVQLIVKGASERGAKRIRLHILTDGRD 582
S GGVHS D + +V+ A+ERGA++I LH DGRD
Sbjct: 120 SAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
>ZYIBO ZyibO COG0696 [G] Phosphoglyceromutase
Length = 514
Score = 107 bits (266), Expect = 4e-23
Identities = 67/157 (42%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K + +V+LDG+G Q N I A+TPVMD+L P L+ A G VGLP D MG
Sbjct: 6 KPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMG 62
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDKG-----TLHLIGLL 471
NSEVGH LGAGRI Q +D + + + + + DK +H++GLL
Sbjct: 63 NSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANP---VLTGAVDKAKNAGKAVHIMGLL 119
Query: 472 SDGGVHSRLDQVQLIVKGASERGAKRIRLHILTDGRD 582
S GGVHS D + +V+ A+ERGA++I LH DGRD
Sbjct: 120 SAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
>PA5131 PA5131 COG0696 [G] Phosphoglyceromutase
Length = 515
Score = 105 bits (262), Expect = 1e-22
Identities = 64/157 (40%), Positives = 87/157 (54%), Gaps = 5/157 (3%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K + +++LDG+G + YN I+ A+ PV D L P L+ G VGLP D MG
Sbjct: 6 KPLVLIILDGFGHSESPDYNAIYAAKKPVWDRLLATQPHG--LISGSGMDVGLP-DGQMG 62
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDKGT-----LHLIGLL 471
NSEVGH LGAGR+ Q V A+ G+ +E+ I + DK +H++GLL
Sbjct: 63 NSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENP---VIAGAVDKAVAADKAVHILGLL 119
Query: 472 SDGGVHSRLDQVQLIVKGASERGAKRIRLHILTDGRD 582
S GGVHS D + + + A+ RGA +I LH DGRD
Sbjct: 120 SPGGVHSHEDHLVAMAQMAARRGAGKIYLHAFLDGRD 156
>BH3557 BH3557 COG0696 [G] Phosphoglyceromutase
Length = 510
Score = 103 bits (257), Expect = 4e-22
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 4/157 (2%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K VA+++LDG+ + N + A P D N P L+KA G AVGLP + MG
Sbjct: 4 KPVALIILDGFAMRDEAKGNAVAQANKPNFDRYWNQYPHA--LLKADGEAVGLP-EGQMG 60
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGF----NYIKESFDKGTLHLIGLLS 474
NSEVGH +GAGRI Q V+ ++ G+ +E+E F N++KE +LH+ GL+S
Sbjct: 61 NSEVGHLNIGAGRIVYQSLTRVNLSIREGEFFENETFLNAMNHVKEK--GSSLHIYGLVS 118
Query: 475 DGGVHSRLDQVQLIVKGASERGAKRIRLHILTDGRDV 585
DGG+HS ++ + +++ A +R+ +H DGRDV
Sbjct: 119 DGGIHSHINHLYALLELAKREQVERVYIHGFLDGRDV 155
>VNG1887G VNG1887G COG0696 [G] Phosphoglyceromutase
Length = 508
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Frame = +1
Query: 136 AVVVLDGWGEASPDQYNCIHVAQTPVMDSL-KNGAPEKWRLVKAHGTAVGLPSDDDMGNS 312
A+V+LDGWG D+ + + A TP D + GA + + G VGLP D MGNS
Sbjct: 4 ALVILDGWGLGDHDRRDAVRAADTPTFDEYAERGA---FGTLTTSGRDVGLP-DGQMGNS 59
Query: 313 EVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKE--SFDKGTLHLIGLLSDGGV 486
EVGH +GAGR+ Q ++ A+A+G + ++ + + + GTLH++GL+SDGGV
Sbjct: 60 EVGHLTIGAGRVVKQAYTRIEDAIAAGDLCGNDAISGALDHVADTGGTLHVMGLVSDGGV 119
Query: 487 HSRLDQVQLIVKGASERGAKRIRLHILTDGRD 582
H+ + +V+ A+ RG + +H TDGRD
Sbjct: 120 HADQQHIHALVECAAGRGVE-AAVHAFTDGRD 150
>BS_PGM BS_pgm COG0696 [G] Phosphoglyceromutase
Length = 511
Score = 98.2 bits (243), Expect = 2e-20
Identities = 61/157 (38%), Positives = 89/157 (55%), Gaps = 4/157 (2%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K A+++LDG+G + N + +A+ P D N P + + A G AVGLP + MG
Sbjct: 4 KPAALIILDGFGLRNETVGNAVALAKKPNFDRYWNQYPHQ--TLTASGEAVGLP-EGQMG 60
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGF----NYIKESFDKGTLHLIGLLS 474
NSEVGH +GAGRI Q V+ A+ G+ ++ F + KE+ LHL GLLS
Sbjct: 61 NSEVGHLNIGAGRIVYQSLTRVNVAIREGEFERNQTFLDAISNAKEN--NKALHLFGLLS 118
Query: 475 DGGVHSRLDQVQLIVKGASERGAKRIRLHILTDGRDV 585
DGGVHS ++ + ++K A + G ++ +H DGRDV
Sbjct: 119 DGGVHSHINHLFALLKLAKKEGLTKVYIHGFLDGRDV 155
>MPN628 MPN628 COG0696 [G] Phosphoglyceromutase
Length = 508
Score = 97.8 bits (242), Expect = 2e-20
Identities = 61/171 (35%), Positives = 95/171 (54%), Gaps = 2/171 (1%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K V + +LDG+G ++ N ++ A+TP +DSL P +++A G AVGLP +G
Sbjct: 3 KKVLLAILDGYGISNKQHGNAVYHAKTPALDSLIKDYP--CVMLEASGEAVGLPQGQ-IG 59
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGF--NYIKESFDKGTLHLIGLLSDG 480
NSEVGH +GAGRI G L++ + +G ++ + + LHLIGL S G
Sbjct: 60 NSEVGHLNIGAGRIVYTGLSLINQNIKTGAFHHNQVLLEAIARAKANNAKLHLIGLFSHG 119
Query: 481 GVHSRLDQVQLIVKGASERGAKRIRLHILTDGRDVLDGSNVGPVETFYINL 633
GVHS +D + ++K A+ + ++ LH+ DGRDV + +E F + L
Sbjct: 120 GVHSHMDHLYALIKLAAPQ--VKMVLHLFGDGRDVAPCTMKSDLEAFMVFL 168
>JHP0908 jhp0908 COG0696 [G] Phosphoglyceromutase
Length = 491
Score = 94.4 bits (233), Expect = 2e-19
Identities = 60/184 (32%), Positives = 96/184 (51%), Gaps = 1/184 (0%)
Frame = +1
Query: 139 VVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEV 318
+++ DG G +N A+ P D + P + L+ HG +VGLP MGNSEV
Sbjct: 7 LIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLP--YSLIDTHGLSVGLPKGQ-MGNSEV 63
Query: 319 GHNALGAGRIFAQGAKLVDAALASGKIWEDEGF-NYIKESFDKGTLHLIGLLSDGGVHSR 495
GH +GAGR+ Q + +L + ++ + F N I++S +HL+GL+SDGGVHS
Sbjct: 64 GHMCIGAGRVLYQDLVRISLSLQNDELKNNPAFLNTIQKSH---VVHLMGLMSDGGVHSH 120
Query: 496 LDQVQLIVKGASERGAKRIRLHILTDGRDVLDGSNVGPVETFYINLVYLCQPVVDAPIAS 675
++ + + E+ K++ LH++TDGRDV S + T+ + +C + S
Sbjct: 121 IEHF-IALALECEKSHKKVCLHLITDGRDVAPKSAL----TYLKQMQNICNENIQIATIS 175
Query: 676 GGCY 687
G Y
Sbjct: 176 GRFY 179
>HP0974 HP0974 COG0696 [G] Phosphoglyceromutase
Length = 491
Score = 94.4 bits (233), Expect = 2e-19
Identities = 60/184 (32%), Positives = 96/184 (51%), Gaps = 1/184 (0%)
Frame = +1
Query: 139 VVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEV 318
+++ DG G +N A+ P D + P + L+ HG +VGLP MGNSEV
Sbjct: 7 LIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLP--YSLIDTHGLSVGLPKGQ-MGNSEV 63
Query: 319 GHNALGAGRIFAQGAKLVDAALASGKIWEDEGF-NYIKESFDKGTLHLIGLLSDGGVHSR 495
GH +GAGR+ Q + +L + ++ + F N I++S +HL+GL+SDGGVHS
Sbjct: 64 GHMCIGAGRVLYQDLVKISLSLQNDELKNNPAFLNTIQKS---PVVHLMGLMSDGGVHSH 120
Query: 496 LDQVQLIVKGASERGAKRIRLHILTDGRDVLDGSNVGPVETFYINLVYLCQPVVDAPIAS 675
++ + + E+ K++ LH++TDGRDV S + T+ + +C + S
Sbjct: 121 IEHF-IALALECEKSHKKVCLHLITDGRDVAPKSAL----TYLKQMQNICNESIQIATIS 175
Query: 676 GGCY 687
G Y
Sbjct: 176 GRFY 179
>MG430 MG430 COG0696 [G] Phosphoglyceromutase
Length = 507
Score = 91.7 bits (226), Expect = 2e-18
Identities = 57/155 (36%), Positives = 87/155 (55%), Gaps = 2/155 (1%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K V + +LDG+G ++ N + A TP++D L N P L+ A G AVGLP +G
Sbjct: 3 KKVLLAILDGYGISNAIYGNAVQNANTPMLDELINSYP--CVLLDASGEAVGLPMGQ-IG 59
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDK--GTLHLIGLLSDG 480
NSEVGH +GAGR+ G L++ + + ++ F E +K +HLIGL S+G
Sbjct: 60 NSEVGHLNIGAGRVVYTGLSLINQHIKDRSFFANKAFLKTIEHVEKNHSKIHLIGLFSNG 119
Query: 481 GVHSRLDQVQLIVKGASERGAKRIRLHILTDGRDV 585
GVHS + + +++ S+ ++ LH+ DGRDV
Sbjct: 120 GVHSHNEHLLALIELFSKHA--KVVLHLFGDGRDV 152
>CJ0434 Cj0434 COG0696 [G] Phosphoglyceromutase
Length = 492
Score = 84.3 bits (207), Expect = 3e-16
Identities = 50/149 (33%), Positives = 81/149 (53%)
Frame = +1
Query: 139 VVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEV 318
+++ DG G ++N A+ P + L P L+K G AVGLP + MGNSEV
Sbjct: 7 LIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNS--LLKTSGLAVGLP-EGQMGNSEV 63
Query: 319 GHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDKGTLHLIGLLSDGGVHSRL 498
GH +G+GRI Q ++ A+ + ++ ++E + + +H+IGL SDGGVHS
Sbjct: 64 GHMCIGSGRIIYQNLVRINKAIENKELEKNENLKKLLAKCKR--VHIIGLYSDGGVHSMD 121
Query: 499 DQVQLIVKGASERGAKRIRLHILTDGRDV 585
+ +++ ++ G + H +TDGRDV
Sbjct: 122 THFKAMLEICAKNG-NEVFAHAITDGRDV 149
>UU182 UU182 COG0696 [G] Phosphoglyceromutase
Length = 502
Score = 73.2 bits (178), Expect = 6e-13
Identities = 45/152 (29%), Positives = 79/152 (51%)
Frame = +1
Query: 127 KTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMG 306
K + ++++DG G D N +H+A P ++ L N P + A +GL ++ G
Sbjct: 5 KKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFPT--LQISAAQQNIGL-LENQAG 61
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDKGTLHLIGLLSDGGV 486
NSE+GH +GAGRI ++ + S +E + IK +H++G+ S+G V
Sbjct: 62 NSEIGHLTIGAGRIILNDNANINNYMKSVD-YESAVLSNIKNEI----VHIVGMYSNGLV 116
Query: 487 HSRLDQVQLIVKGASERGAKRIRLHILTDGRD 582
HS + + I+K + ++ LH+++DGRD
Sbjct: 117 HSNYEHIHWIIKQIIKNN-NQVVLHLISDGRD 147
>CT385 CT385 COG0537 [F] 7 Diadenosine tetraphosphate (Ap4A)
hydrolase and other HIT f
Length = 111
Score = 31.2 bits (69), Expect = 2.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 364 KLVDAALASGKIWEDEGFNYIKESFDKGTLHLI 462
++++ A+ K++EDE F IK+ F + +HL+
Sbjct: 7 RIIEGAVECDKVFEDENFIVIKDKFPQAPVHLL 39
>PA4138 PA4138 COG0162 [J] Tyrosyl-tRNA synthetase
Length = 412
Score = 30.8 bits (68), Expect = 3.4
Identities = 30/121 (24%), Positives = 54/121 (43%), Gaps = 7/121 (5%)
Frame = +1
Query: 163 EASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDD-----MGNSEVGHN 327
+A+ D + H+ +M L+ L+ T +G PS D + +++ N
Sbjct: 45 DATADSLHVGHLQGLMLMRWLQKAGHRPLLLIGGATTRIGDPSFRDSSRPILTEAQIQAN 104
Query: 328 ALGAGRIFAQGAKLVDAALASGKIWEDEGFNYIKESFDKGTLH--LIGLLSDGGVHSRLD 501
G R+F++ +L D +L + W D G Y+ E D+ H + LL+ + RLD
Sbjct: 105 IDGIARVFSRYVELHDDSLVNNAEWLD-GVGYL-EFLDRVGRHFSINRLLTFDAIRQRLD 162
Query: 502 Q 504
+
Sbjct: 163 R 163
>TM0312 TM0312 COG0673 [R] Predicted dehydrogenases and related
proteins
Length = 328
Score = 30.8 bits (68), Expect = 3.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 373 DAALASGKIWE--DEGFNYIKESFDKGTLHLIGLLSDGGVH 489
D + +IW DE Y+ + K H+ G LSDGGVH
Sbjct: 150 DPVFMNWQIWVGMDENNKYVHTDWRKKPKHVGGFLSDGGVH 190
>APE2208 APE2208 COG0630 [N] Predicted ATPases involved in pili and
flagella biosynthesi
Length = 476
Score = 30.4 bits (67), Expect = 4.4
Identities = 23/80 (28%), Positives = 31/80 (38%)
Frame = +1
Query: 76 MATTNWTLPDHPTLPKGKTVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRL 255
+A LPD P P+G +A V D W P + I VA+ EK
Sbjct: 351 LAVKRVRLPD-PASPEGHRIARKVTDVWEITGPSSEDAIEVARWNPFTKEHEHFMEKSVA 409
Query: 256 VKAHGTAVGLPSDDDMGNSE 315
+ G VGL D+ + E
Sbjct: 410 IAEIGKLVGLTKDEVLAEIE 429
>CC0922_1 CC0922_1 COG0318 [I] Acyl-CoA synthetases
(AMP-forming)/AMP-acid ligases II
Length = 600
Score = 30.0 bits (66), Expect = 5.8
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 5/137 (3%)
Frame = +1
Query: 139 VVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAH---GTAVGLPSDDDMGN 309
V V+ WG + V T + L WRL + G + L D+D
Sbjct: 328 VEVVHAWGMTETSPVGTLSVL-TDELSKLPYDQQMHWRLKQGRPPLGVEICLKDDED--- 383
Query: 310 SEVGHNALGAGRIFAQGAKLVDAAL--ASGKIWEDEGFNYIKESFDKGTLHLIGLLSDGG 483
+ H+ G + +G + A GKI +DEGF FD G + + + G
Sbjct: 384 KRLPHDGKAFGNLKIRGPIIAAEYFRGAGGKILDDEGF------FDTGD---VATIDEYG 434
Query: 484 VHSRLDQVQLIVKGASE 534
D+ + +VK E
Sbjct: 435 FMQITDRAKDVVKSGGE 451
>CDA7747 CDa7747 COG0515 [T] Serine/threonine protein kinases
Length = 495
Score = 29.6 bits (65), Expect = 7.5
Identities = 17/59 (28%), Positives = 27/59 (44%)
Frame = -2
Query: 409 RLPKSSRKQEQHQQASHLEQRFGQLQEHCGQLHCCPCRRHLGDQQQFHEPSLVSTSQEH 233
R + R+ QHQQ+ ++Q+ Q Q QL + QQQ + +S +Q H
Sbjct: 360 RRHRDQRRTRQHQQSQQVQQQQLQAQAQAQQLQQLQQAQQAQQQQQSQQHQPLSAAQLH 418
>RV2888C Rv2888c COG0154 [J] Asp-tRNAAsn/Glu-tRNAGln
amidotransferase A subunit and rela
Length = 473
Score = 29.6 bits (65), Expect = 7.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 180 LVGAGLAPSVEHDDGH---RLPLGERGVVGERPIRGR 79
LV AG+ P +DG R+P G+VG +P RGR
Sbjct: 164 LVAAGVVPIAHANDGGGSIRIPAACNGLVGLKPSRGR 200
>CC0905 CC0905 COG1766 [N] Flagellar biosynthesis/type III
secretory pathway lipoprotei
Length = 536
Score = 29.3 bits (64), Expect = 9.8
Identities = 24/90 (26%), Positives = 36/90 (39%), Gaps = 1/90 (1%)
Frame = +1
Query: 130 TVAVVVLDGWGEASPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDM-G 306
+ AV + G E S D I Q V S+ N EK ++ HG + PSD+ + G
Sbjct: 147 SAAVTIGVGSREPSSDMVRAI---QNLVSSSVPNMKAEKVAVIDQHGKTLSAPSDESLAG 203
Query: 307 NSEVGHNALGAGRIFAQGAKLVDAALASGK 396
+ RI +++ L GK
Sbjct: 204 KMAQDRKSEVEARIAKTVKDMIEGVLGPGK 233
>RPOB rpoB COG0085 [K] DNA-directed RNA polymerase beta subunit/140
kD subunit (split
Length = 1342
Score = 29.3 bits (64), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 186 VVLVGAGLAPSVEHDDGHRLPLG 118
VV VGA L P +EHDD +R +G
Sbjct: 660 VVSVGASLIPFLEHDDANRALMG 682
>ZRPOB ZrpoB COG0085 [K] DNA-directed RNA polymerase beta
subunit/140 kD subunit (spli
Length = 1342
Score = 29.3 bits (64), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 186 VVLVGAGLAPSVEHDDGHRLPLG 118
VV VGA L P +EHDD +R +G
Sbjct: 660 VVSVGASLIPFLEHDDANRALMG 682
>BS_YWBO BS_ywbO COG2761 [Q] Predicted dithiol-disulfide isomerase
involved in polyketid
Length = 200
Score = 29.3 bits (64), Expect = 9.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 326 LWPTSLLPMSSSLG----RPTAVP*AFTSLHFSGAPFLRESMTG 207
+W TS+ PM+ LG P P +T L F G F +E G
Sbjct: 60 MWQTSIQPMAEKLGVEINFPNVSPHPYTDLAFEGFHFAKEYNKG 103
>TM0547_1 TM0547_1 COG0460 [E] Homoserine dehydrogenase
Length = 337
Score = 29.3 bits (64), Expect = 9.8
Identities = 29/124 (23%), Positives = 55/124 (43%), Gaps = 17/124 (13%)
Frame = +1
Query: 211 VMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDAALAS 390
++ + N +P+K+ L+ + DD + NS+V A+G + LV AL
Sbjct: 54 IISKVINRSPQKYELLGVPKEEIAFDFDDLILNSDVVVEAIGGTDV---AVDLVRRALEL 110
Query: 391 GKI-----------WEDEGFNYIK------ESFDKGTLHLIGLLSDGGVHSRLDQVQLIV 519
G+I + +E YIK E+ G + +I LL D + ++ +++ I+
Sbjct: 111 GRIVVTPNKNLISEYGNEFSEYIKKRKLFFEASVGGGIPIISLLQDYLIFQKVTRIRGIM 170
Query: 520 KGAS 531
G +
Sbjct: 171 NGTT 174
>CJ0478 Cj0478 COG0085 [K] DNA-directed RNA polymerase beta
subunit/140 kD subunit (spl
Length = 1378
Score = 29.3 bits (64), Expect = 9.8
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Frame = -3
Query: 234 TILERIHDGRLGDMDAVVLVG--AGLAPSVEHDDGHRLPLG 118
TIL R + +L D+ + ++VG A L P +EHDD +R +G
Sbjct: 657 TILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMG 697
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34069472
Number of Sequences: 78847
Number of extensions: 632704
Number of successful extensions: 2070
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of query: 304
length of database: 26,228,252
effective HSP length: 49
effective length of query: 255
effective length of database: 22,364,749
effective search space: 5703010995
effective search space used: 5703010995
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)