BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_C04_E07ZS5.seq
         (889 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PA2727_3 PA2727_3  COG1112 [L] Superfamily I DNA and RNA helicas...    40  0.007
CDA7322 CDa7322  COG0515 [T] Serine/threonine protein kinases          34  0.30
DR2600 DR2600  COG2340 [S] Uncharacterized protein with SCP/PR1 ...    29  9.5
MLL7128 mll7128  COG1012 [C] NAD-dependent aldehyde dehydrogenases     29  9.5
YJR035W YJR035w  COG0553 [K] Superfamily II DNA/RNA helicases, S...    29  9.5
RV2014 Rv2014  COG3547 [L] Transposase                                 29  9.5

>PA2727_3 PA2727_3  COG1112 [L] Superfamily I DNA and RNA helicases
           and helicase subunits
          Length = 286

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 22/52 (42%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
 Frame = +1

Query: 64  PRXCPAAR-PWRLWLPWATPRASRLQGRSWSSSGQRPPSNRSTWRTCCARRP 216
           P   PA R  WR W   A  RA R   R WS+SG RP +  + WR C    P
Sbjct: 184 PLDFPALRHAWRRWTS-AAWRAWRKTARRWSASGYRPATKAARWRNCAPSPP 234



>CDA7322 CDa7322  COG0515 [T] Serine/threonine protein kinases
          Length = 699

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
 Frame = +3

Query: 216 EVLGKCVIGTTYKAVR----ESSATVAVKRLKDV----GVAEPQFRERIADIGELQHEFI 371
           E +G+    T  KA+     ES A   + R K +    G A       ++ +  L H  I
Sbjct: 174 ETIGQGAFATVKKAIERSTGESYAVKIINRRKALNTGGGSAMAGVDRELSILERLNHPNI 233

Query: 372 VPLRAYYYSKDEKLLVCDLMPLGSLSALLPWNRSSG 479
           V L+A+Y   D   +V +L+P G L   +  N + G
Sbjct: 234 VALKAFYEDMDNYYIVMELVPGGDLMDFVAANGAIG 269



>DR2600 DR2600  COG2340 [S] Uncharacterized protein with SCP/PR1
           domains
          Length = 347

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 48  PRGPKPPXLPSGAAVAPMATVGHPAGQSTSGKKLVFFGSAAA 173
           P  P PP  P+ A   P+A    P  QST    L     AAA
Sbjct: 42  PVPPPPPSAPAAAPALPVAPAPAPVAQSTCAPALPALHLAAA 83



>MLL7128 mll7128  COG1012 [C] NAD-dependent aldehyde dehydrogenases
          Length = 497

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 22/64 (34%), Positives = 27/64 (41%), Gaps = 9/64 (14%)
 Frame = +3

Query: 156 FGSAAAVQPFDLED--LLRASAEVLGKCVIGTTYKAVRESS-------ATVAVKRLKDVG 308
           FG  AAV PFD ED  + RA+A   G      T    R+           VA+ R+K  G
Sbjct: 402 FGPVAAVTPFDSEDEVIARANATEYGLVAYVVTDNGARQQRMGRALDYGMVAINRVKITG 461

Query: 309 VAEP 320
              P
Sbjct: 462 APIP 465



>YJR035W YJR035w  COG0553 [K] Superfamily II DNA/RNA helicases, SNF2
           family
          Length = 1085

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 437 QGHKVAHKQLLIFAVVVSTERHDELVLKLANVRNALTELW 318
           +GHK+ +    I       + H+ ++L    ++N LTELW
Sbjct: 470 EGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELW 509



>RV2014 Rv2014  COG3547 [L] Transposase
          Length = 223

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
 Frame = -1

Query: 127 WPAGWPTVAIGA------TAAPLGNXGGFGPRGSDXT 35
           WPAGWP +A  A      T AP G  G  G   +  T
Sbjct: 20  WPAGWPPLATAAVLHDRLTGAPRGATGDEGAANAHIT 56



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26494988
Number of Sequences: 78847
Number of extensions: 496271
Number of successful extensions: 1838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of query: 296
length of database: 26,228,252
effective HSP length: 49
effective length of query: 246
effective length of database: 22,364,749
effective search space: 5501728254
effective search space used: 5501728254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)