BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_C07_E13ZS5.seq
         (866 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MLL0224 mll0224  COG0513 [L] 3 Superfamily II DNA and RNA helica...    32  1.4
CDA7747 CDa7747  COG0515 [T] Serine/threonine protein kinases          30  4.1
ZYIHI ZyihI  COG3078 [S] Uncharacterized BCR                           30  4.1
YIHI yihI  COG3078 [S] Uncharacterized BCR                             30  7.1

>MLL0224 mll0224  COG0513 [L] 3 Superfamily II DNA and RNA helicases
          Length = 527

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = -1

Query: 800 VPRINLRRARTQVPRQGESTERKAIEATEKRENEKGGKRATHDGGTRERSRPRPH 636
           V  I+ RRAR +  R  E+TERK+ +  E R  E+G  R       R+ SRP  H
Sbjct: 453 VADISERRARKEAIRS-ENTERKSSDRNEPRAPERGDTRP-----QRDNSRPARH 501



>CDA7747 CDa7747  COG0515 [T] Serine/threonine protein kinases
          Length = 495

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 649 GHAHTQSEKERRKKESRATRSTQDPQRKKEQSKRGGGKKRGHQE-AVAQNGENQ 491
           GH +  +E+ERR ++ R TR  Q  Q+ ++Q  +   + +  Q+   AQ  + Q
Sbjct: 350 GHPNPPNERERRHRDQRRTRQHQQSQQVQQQQLQAQAQAQQLQQLQQAQQAQQQ 403



>ZYIHI ZyihI  COG3078 [S] Uncharacterized BCR
          Length = 168

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -2

Query: 631 SEKERRKKESRATRSTQDPQRKKEQSKRGGGKKRGHQEAVAQNGENQGAGRWKGLKHHPR 452
           S   R K  ++A R T++   ++ + ++   K+RGH       G N  +G  KG ++ P+
Sbjct: 4   SSPSRSKGHAKARRKTREELNQEARDRKRQKKRRGHAPGSRAAGGNNTSGS-KG-QNAPK 61

Query: 451 DP 446
           DP
Sbjct: 62  DP 63



>YIHI yihI  COG3078 [S] Uncharacterized BCR
          Length = 169

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -2

Query: 631 SEKERRKKESRATRSTQDPQRKKEQSKRGGGKKRGHQEAVAQNGENQGAGRWKGLKHHPR 452
           S   R K  ++A R T++   ++ + ++   K+RGH       G N  +G  KG ++ P+
Sbjct: 5   SSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGS-KG-QNAPK 62

Query: 451 DP 446
           DP
Sbjct: 63  DP 64



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33675897
Number of Sequences: 78847
Number of extensions: 561277
Number of successful extensions: 1705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of query: 288
length of database: 26,228,252
effective HSP length: 49
effective length of query: 239
effective length of database: 22,364,749
effective search space: 5345175011
effective search space used: 5345175011
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)