BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_C11_E21ZS5.seq
(914 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CDA2233 CDa2233 COG0543 [H] 2-polyprenylphenol hydroxylase and ... 85 2e-16
YIL043C YIL043c COG0543 [H] 2-polyprenylphenol hydroxylase and ... 79 1e-14
YKL150W YKL150w COG0543 [H] 2-polyprenylphenol hydroxylase and ... 46 1e-04
YML125C YML125c COG0543 [H] 2-polyprenylphenol hydroxylase and ... 43 7e-04
CDA8388 CDa8388 COG0543 [H] 2-polyprenylphenol hydroxylase and ... 41 0.003
CDA4367 CDa4367 COG0543 [H] 2-polyprenylphenol hydroxylase and ... 33 0.89
>CDA2233 CDa2233 COG0543 [H] 2-polyprenylphenol hydroxylase and
related flavodoxin oxido
Length = 294
Score = 84.7 bits (208), Expect = 2e-16
Identities = 43/88 (48%), Positives = 56/88 (62%)
Frame = +1
Query: 229 LCRSKMPKGCLDPENFRKFKLVEKTQISHNVAKFRFALPTPTSVLGLPIGQHISCRGQDA 408
L +SK L P+ F+KF L+EK ++SHN A +RF LP T LGLPIGQHIS G
Sbjct: 38 LQQSKKHTPVLKPDEFQKFPLIEKIRVSHNSAIYRFGLPKSTDRLGLPIGQHISI-GATI 96
Query: 409 TGEELIKPYTPTTLDSDLGNFQLCFKMY 492
G+E+++ YTP + D LG+F L K Y
Sbjct: 97 DGKEVVRSYTPISTDDQLGHFDLLIKTY 124
>YIL043C YIL043c COG0543 [H] 2-polyprenylphenol hydroxylase and
related flavodoxin oxido
Length = 322
Score = 79.0 bits (193), Expect = 1e-14
Identities = 41/85 (48%), Positives = 57/85 (66%), Gaps = 3/85 (3%)
Frame = +1
Query: 250 KGCLDPE--NFRKFKLVEKTQISHNVAKFRFALPTPTSVLGLPIGQHISCRGQDATGEEL 423
K LDP+ +F+ F LVEKT ++HN + ++F LP VLGLPIGQHI + + G+++
Sbjct: 68 KPVLDPKRNDFQSFPLVEKTILTHNTSMYKFGLPHADDVLGLPIGQHIVIKA-NINGKDI 126
Query: 424 IKPYTPTTLDSDL-GNFQLCFKMYP 495
+ YTPT+LD D GNF+L K YP
Sbjct: 127 TRSYTPTSLDGDTKGNFELLVKSYP 151
>YKL150W YKL150w COG0543 [H] 2-polyprenylphenol hydroxylase and
related flavodoxin oxido
Length = 302
Score = 45.8 bits (107), Expect = 1e-04
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 310 SHNVAKFRFALPTPTSVLGLPIGQHISCRGQDATGEELIKPYTPTTLDSDLGNFQLCFKM 489
SH+ +F F LPT S +GL + + + G +++PYTP + S G+FQL K
Sbjct: 65 SHDTRRFTFKLPTEDSEMGLVLASALFAKFVTPKGSNVVRPYTPVSDLSQKGHFQLVVKH 124
Query: 490 Y 492
Y
Sbjct: 125 Y 125
>YML125C YML125c COG0543 [H] 2-polyprenylphenol hydroxylase and
related flavodoxin oxido
Length = 312
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 259 LDPENFRKFKLVEKTQISHNVAKFRFALPTPTSVLGLPIGQHISCRGQDATGEELIKPYT 438
L P+ + +L ++T IS N A +RF L T L +P G H++ R G++ ++ Y
Sbjct: 67 LYPDRWTSLELEDQTIISKNTALYRFKLKTRLESLDIPAGHHVAVR-VPIDGKQEVRYYN 125
Query: 439 PTTLDSDLGNFQLCFKMYPQEK 504
P + + G L K Y K
Sbjct: 126 PISSKLESGYLDLVVKAYVDGK 147
>CDA8388 CDa8388 COG0543 [H] 2-polyprenylphenol hydroxylase and
related flavodoxin oxido
Length = 285
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +1
Query: 274 FRKFKLVEKTQISHNVAKFRFALPTPTSVLGLPIGQHISCRGQDATGEELIKPYTPTTLD 453
+++F+L++KT I+ + +RF L VL +P G ++C + G++ ++ YTP +
Sbjct: 64 WQEFELLDKTLIAPMTSIYRFKLRREDEVLDIPTGHSLAC-CFNVDGKDEVRFYTPISNQ 122
Query: 454 SDLGNFQLCFKMY 492
D G F + K Y
Sbjct: 123 FDKGFFDILVKHY 135
>CDA4367 CDa4367 COG0543 [H] 2-polyprenylphenol hydroxylase and
related flavodoxin oxido
Length = 301
Score = 32.7 bits (73), Expect = 0.89
Identities = 19/77 (24%), Positives = 29/77 (36%)
Frame = +1
Query: 262 DPENFRKFKLVEKTQISHNVAKFRFALPTPTSVLGLPIGQHISCRGQDATGEELIKPYTP 441
D + KL + ++HN F L V GL + + G +I+PYTP
Sbjct: 49 DSNEWVDLKLSKSIDLTHNTKHLVFKLKDENDVSGLITASCLLTKFVTPKGNNVIRPYTP 108
Query: 442 TTLDSDLGNFQLCFKMY 492
+ + G K Y
Sbjct: 109 VSDVNQSGEIDFVIKKY 125
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27500637
Number of Sequences: 78847
Number of extensions: 515284
Number of successful extensions: 1501
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of query: 304
length of database: 26,228,252
effective HSP length: 49
effective length of query: 255
effective length of database: 22,364,749
effective search space: 5703010995
effective search space used: 5703010995
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)