BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_D01_G01ZS5.seq
(885 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YML026C YML026c COG0099 [J] Ribosomal protein S13 191 1e-48
YDR450W YDR450w COG0099 [J] Ribosomal protein S13 191 1e-48
CDA7944 CDa7944 COG0099 [J] Ribosomal protein S13 175 8e-44
MTH34 MTH34 COG0099 [J] Ribosomal protein S13 120 2e-27
PH1641 PH1641 COG0099 [J] Ribosomal protein S13 115 8e-26
PAB0360 PAB0360 COG0099 [J] Ribosomal protein S13 115 1e-25
MJ0189 MJ0189 COG0099 [J] Ribosomal protein S13 106 6e-23
TA1033 Ta1033 COG0099 [J] Ribosomal protein S13 100 4e-21
TVN0562 TVN0562 COG0099 [J] Ribosomal protein S13 100 4e-21
AF2285 AF2285 COG0099 [J] Ribosomal protein S13 97 5e-20
VNG1132G VNG1132G COG0099 [J] Ribosomal protein S13 79 1e-14
APE1737 APE1737 COG0099 [J] Ribosomal protein S13 72 2e-12
CPN0628 CPn0628 COG0099 [J] Ribosomal protein S13 54 4e-07
UU255 UU255 COG0099 [J] Ribosomal protein S13 52 1e-06
CT509 CT509 COG0099 [J] Ribosomal protein S13 52 1e-06
TM1475 TM1475 COG0099 [J] Ribosomal protein S13 51 2e-06
BB0500 BB0500 COG0099 [J] Ribosomal protein S13 50 5e-06
HP1296 HP1296 COG0099 [J] Ribosomal protein S13 50 5e-06
BH0160 BH0160 COG0099 [J] Ribosomal protein S13 50 5e-06
JHP1216 jhp1216 COG0099 [J] Ribosomal protein S13 49 2e-05
AQ_074 aq_074 COG0099 [J] Ribosomal protein S13 48 3e-05
RP637 RP637 COG0099 [J] Ribosomal protein S13 46 1e-04
PM1393 PM1393 COG0099 [J] Ribosomal protein S13 45 2e-04
HI0799 HI0799 COG0099 [J] Ribosomal protein S13 45 2e-04
BS_RPSM BS_rpsM COG0099 [J] Ribosomal protein S13 44 4e-04
MG175 MG175 COG0099 [J] Ribosomal protein S13 43 6e-04
TP0210 TP0210 COG0099 [J] Ribosomal protein S13 42 0.001
RPSM rpsM COG0099 [J] Ribosomal protein S13 42 0.001
ZRPSM ZrpsM COG0099 [J] Ribosomal protein S13 42 0.001
XF1173 XF1173 COG0099 [J] Ribosomal protein S13 42 0.001
MLR0323 mlr0323 COG0099 [J] Ribosomal protein S13 42 0.002
MPN189 MPN189 COG0099 [J] Ribosomal protein S13 41 0.002
CJ1592 Cj1592 COG0099 [J] Ribosomal protein S13 41 0.002
RV3460C Rv3460c COG0099 [J] Ribosomal protein S13 40 0.005
VC2574 VC2574 COG0099 [J] Ribosomal protein S13 40 0.007
BU502 BU502 COG0099 [J] Ribosomal protein S13 40 0.007
CC1270 CC1270 COG0099 [J] Ribosomal protein S13 39 0.012
ML1960 ML1960 COG0099 [J] Ribosomal protein S13 39 0.016
DR2125 DR2125 COG0099 [J] Ribosomal protein S13 38 0.020
NMB0165 NMB0165 COG0099 [J] Ribosomal protein S13 37 0.035
NMA0106 NMA0106 COG0099 [J] Ribosomal protein S13 37 0.035
SPY0077 SPy0077 COG0099 [J] Ribosomal protein S13 37 0.035
MJ1625 MJ1625 COG1293 [K] Predicted RNA-binding protein homolog... 35 0.17
AF2038 AF2038 COG1293 [K] Predicted RNA-binding protein homolog... 32 1.9
BS_RECN BS_recN COG0497 [L] ATPases involved in DNA repair 31 3.3
SLL0031 sll0031 COG1142 [C] Fe-S-cluster-containing hydrogenase... 31 3.3
RV0811C Rv0811c COG0354 [R] Predicted aminomethyltransferase re... 30 4.2
CC3641 CC3641 COG0053 [P] Predicted Co/Zn/Cd cation transporters 29 9.5
L151330 L151330 COG0026 [F] Phosphoribosylaminoimidazole carbox... 29 9.5
SLR0342 slr0342 COG1290 [C] Cytochrome b subunit of the bc comp... 29 9.5
>YML026C YML026c COG0099 [J] Ribosomal protein S13
Length = 146
Score = 191 bits (485), Expect = 1e-48
Identities = 87/137 (63%), Positives = 115/137 (83%), Gaps = 2/137 (1%)
Frame = +3
Query: 105 MSLIAGEE--FQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGE 278
MSL+ E+ FQHILR+LNTNVDG KI++ALT+IKGVGRR+SN+VCKKAD+D++KRAGE
Sbjct: 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGE 60
Query: 279 LSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIR 458
L+ EE++R++ ++ NP +K+P WFLNR+ D DG+ ++N V+ KLRDDLERLKKIR
Sbjct: 61 LTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIR 120
Query: 459 NHRGLRHYWGVRVRGQH 509
HRG+RH+WG+RVRGQH
Sbjct: 121 AHRGIRHFWGLRVRGQH 137
>YDR450W YDR450w COG0099 [J] Ribosomal protein S13
Length = 146
Score = 191 bits (485), Expect = 1e-48
Identities = 87/137 (63%), Positives = 115/137 (83%), Gaps = 2/137 (1%)
Frame = +3
Query: 105 MSLIAGEE--FQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGE 278
MSL+ E+ FQHILR+LNTNVDG KI++ALT+IKGVGRR+SN+VCKKAD+D++KRAGE
Sbjct: 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGE 60
Query: 279 LSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIR 458
L+ EE++R++ ++ NP +K+P WFLNR+ D DG+ ++N V+ KLRDDLERLKKIR
Sbjct: 61 LTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIR 120
Query: 459 NHRGLRHYWGVRVRGQH 509
HRG+RH+WG+RVRGQH
Sbjct: 121 AHRGIRHFWGLRVRGQH 137
>CDA7944 CDa7944 COG0099 [J] Ribosomal protein S13
Length = 135
Score = 175 bits (444), Expect = 8e-44
Identities = 74/121 (61%), Positives = 105/121 (86%)
Frame = +3
Query: 147 VLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNP 326
+LNTN+DG+ KIM+ALT I+GVGRR++N+VCKKAD+++ KRAGEL+ EE++R++ ++ NP
Sbjct: 7 LLNTNIDGRIKIMYALTKIRGVGRRYANLVCKKADVELTKRAGELTQEELERIVTIMQNP 66
Query: 327 RQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQ 506
+K+P WFLNR+KD DG+ V++N ++ KLRDDLERLKKIR+HRG+RH+WG++VRGQ
Sbjct: 67 TNYKIPAWFLNRQKDQVDGKDYHVLANNLESKLRDDLERLKKIRSHRGIRHFWGLKVRGQ 126
Query: 507 H 509
H
Sbjct: 127 H 127
>MTH34 MTH34 COG0099 [J] Ribosomal protein S13
Length = 149
Score = 120 bits (302), Expect = 2e-27
Identities = 53/128 (41%), Positives = 86/128 (66%)
Frame = +3
Query: 123 EEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDR 302
EEF+H++R+ ++DG + + ALTSIKGVG+ S + A D+N+R G LS EE++R
Sbjct: 3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIER 62
Query: 303 LMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHY 482
L + NP ++ +P W +NR+ DY+ G ++ + ++M LR+DL R++K R+++G RH
Sbjct: 63 LEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHE 122
Query: 483 WGVRVRGQ 506
G+ VRGQ
Sbjct: 123 LGLPVRGQ 130
>PH1641 PH1641 COG0099 [J] Ribosomal protein S13
Length = 148
Score = 115 bits (289), Expect = 8e-26
Identities = 53/145 (36%), Positives = 93/145 (63%)
Frame = +3
Query: 126 EFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRL 305
+F+HI+RV ++DG +++ +ALT+IKGVG F+ +VC+ A +D +AG L+ E++ ++
Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 306 MAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYW 485
++ +P +P W +NR KDY+ G+ +++ +DM +R+D+ RL++IR +RG+RH
Sbjct: 63 EEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
Query: 486 GVRVRGQHXXXXXXXXXXXXXSKKR 560
G+ VRGQ SKK+
Sbjct: 123 GLPVRGQRTRSNFRRGQTVGVSKKK 147
>PAB0360 PAB0360 COG0099 [J] Ribosomal protein S13
Length = 148
Score = 115 bits (288), Expect = 1e-25
Identities = 53/145 (36%), Positives = 93/145 (63%)
Frame = +3
Query: 126 EFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRL 305
+F+HI+RV ++DG +++ +ALT+IKGVG F+ +VC+ A +D +AG L+ E++ ++
Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 306 MAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYW 485
++ +P +P W +NR KDY+ GR +++ +DM +R+D+ RL++IR +RG+RH
Sbjct: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHEL 122
Query: 486 GVRVRGQHXXXXXXXXXXXXXSKKR 560
G+ VRGQ S+K+
Sbjct: 123 GLPVRGQRTRSNFRRGQTVGVSRKK 147
>MJ0189 MJ0189 COG0099 [J] Ribosomal protein S13
Length = 150
Score = 106 bits (264), Expect = 6e-23
Identities = 49/127 (38%), Positives = 82/127 (63%)
Frame = +3
Query: 126 EFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRL 305
EF++++RV T++DG +K++ AL I GVG + + + A +D NK AG L+ EE+ ++
Sbjct: 5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKI 64
Query: 306 MAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYW 485
V+ +P +F +P W NR+KDY G V+ + + + ++D+ RLK+IR +RG+RH
Sbjct: 65 EEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHEL 124
Query: 486 GVRVRGQ 506
G+ RGQ
Sbjct: 125 GLPCRGQ 131
>TA1033 Ta1033 COG0099 [J] Ribosomal protein S13
Length = 171
Score = 100 bits (248), Expect = 4e-21
Identities = 40/128 (31%), Positives = 90/128 (70%)
Frame = +3
Query: 123 EEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDR 302
++FQ+I+R+ N +++G++ + AL+ +KG+G R ++ ++ D+ ++K+ GEL E++++
Sbjct: 26 KDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEK 85
Query: 303 LMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHY 482
L V +++ +P+W LN +++ G+ +VS +++++++D+ +KKIR+++G+RH
Sbjct: 86 LREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHE 144
Query: 483 WGVRVRGQ 506
G +VRGQ
Sbjct: 145 KGKKVRGQ 152
>TVN0562 TVN0562 COG0099 [J] Ribosomal protein S13
Length = 171
Score = 100 bits (248), Expect = 4e-21
Identities = 42/128 (32%), Positives = 88/128 (67%)
Frame = +3
Query: 123 EEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDR 302
++FQ+I+R+ N +++G++ I AL+ +KG+G R + ++ ++ K+ GEL +E+++
Sbjct: 26 KDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEK 85
Query: 303 LMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHY 482
L V N +++ +PDW LN +++ G+ +V+ +D+++++D+ +KKIR+++G+RH
Sbjct: 86 LKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHE 144
Query: 483 WGVRVRGQ 506
G +VRGQ
Sbjct: 145 KGKKVRGQ 152
>AF2285 AF2285 COG0099 [J] Ribosomal protein S13
Length = 146
Score = 96.7 bits (239), Expect = 5e-20
Identities = 48/126 (38%), Positives = 78/126 (61%)
Frame = +3
Query: 129 FQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLM 308
F+HI+R+ +T++DG + +MFALT IKG+G R + + + +D + GEL E ++++
Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVK 62
Query: 309 AVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWG 488
V + +P W LNR+KD G+ ++S VD D+ERL K++ +RG+RH G
Sbjct: 63 KFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARG 121
Query: 489 VRVRGQ 506
+VRGQ
Sbjct: 122 KKVRGQ 127
>VNG1132G VNG1132G COG0099 [J] Ribosomal protein S13
Length = 171
Score = 78.6 bits (192), Expect = 1e-14
Identities = 39/128 (30%), Positives = 70/128 (54%)
Frame = +3
Query: 123 EEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDR 302
E+ Q+ +R+ T++DG + + AL + GVGRR + IV +A +D G L + ++
Sbjct: 11 EDIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIES 70
Query: 303 LMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHY 482
+ V + + P W NR+ D+ G + V++ D+ R++ IR+++G+RH
Sbjct: 71 VTDAVDSFTEH-APAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRHE 129
Query: 483 WGVRVRGQ 506
G +VRGQ
Sbjct: 130 RGQKVRGQ 137
>APE1737 APE1737 COG0099 [J] Ribosomal protein S13
Length = 111
Score = 71.6 bits (174), Expect = 2e-12
Identities = 37/109 (33%), Positives = 58/109 (52%)
Frame = +3
Query: 234 VCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAV 413
V + +D K+ G L+ EE+ RL V+ + Q +P W NR+KDY+ G+ ++ + +
Sbjct: 3 VIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSEL 62
Query: 414 DMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHXXXXXXXXXXXXXSKKR 560
R D+ER KI + RG+RH +G++VRGQ KKR
Sbjct: 63 IFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 111
>CPN0628 CPn0628 COG0099 [J] Ribosomal protein S13
Length = 122
Score = 53.9 bits (128), Expect = 4e-07
Identities = 33/121 (27%), Positives = 59/121 (48%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R++ ++ K+K+ +LT I G+G S+ + KK +D RA EL+ EE+ RL +++ +
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGSARSDEIIKKLKLDPEARASELTEEEVGRLNSLLQS 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
V + +++ D++RL I ++RG RH + VRG
Sbjct: 63 ----------------------EYTVEGDLRRRVQSDIKRLIAIHSYRGQRHRLSLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>UU255 UU255 COG0099 [J] Ribosomal protein S13
Length = 132
Score = 52.4 bits (124), Expect = 1e-06
Identities = 35/121 (28%), Positives = 64/121 (51%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+L ++ ++++ +LT I G+G+ S + K A+ID N R +L+ E++ + V N
Sbjct: 3 RILGVDIPNDKRVVISLTYIFGIGKSTSQQILKLANIDENIRVKDLADEQIAEIRRVALN 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+ N +K +G + V+ D++RL +I ++RG+RH G+ VRG
Sbjct: 63 FVK-------ANGEKLQLEGDLRRTVAM--------DIKRLMEIGSYRGIRHRRGLPVRG 107
Query: 504 Q 506
Q
Sbjct: 108 Q 108
>CT509 CT509 COG0099 [J] Ribosomal protein S13
Length = 122
Score = 52.0 bits (123), Expect = 1e-06
Identities = 34/121 (28%), Positives = 59/121 (48%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R++ ++ K+K+ +LT I G+G S + + ++ RA EL+ EE+ RL A++ +
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSKEIIARLQLNPEARAAELTEEEVGRLNALLQS 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
DY VV + +++ D++RL I +RG RH + VRG
Sbjct: 63 ---------------DY-------VVEGDLRRRVQSDIKRLITIHAYRGQRHRLSLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>TM1475 TM1475 COG0099 [J] Ribosomal protein S13
Length = 125
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/121 (29%), Positives = 57/121 (46%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R++ + +K+ ALT I G+GR S + K ID KR G+L+ EE+ ++ + +
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYIQD 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
FKV +G V ++ RL +I +RG+RH G+ VRG
Sbjct: 63 --HFKV------------EGELRSEVER--------NIRRLIEIGCYRGIRHKLGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>BB0500 BB0500 COG0099 [J] Ribosomal protein S13
Length = 125
Score = 50.1 bits (118), Expect = 5e-06
Identities = 34/121 (28%), Positives = 60/121 (49%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ +++ ALTSI G+GR + VC K+ I +K A +L +E++RL V+
Sbjct: 3 RISGIDLPNNKQLKIALTSIYGIGRTRALEVCNKSSISPSKIAKDLDNDEVNRLRKVI-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+ DY +V + ++ ++RL I +RG+RH G+ +RG
Sbjct: 61 -------------ESDY-------IVEGKLRSEVAMSIKRLMDIACYRGVRHRKGLPLRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>HP1296 HP1296 COG0099 [J] Ribosomal protein S13
Length = 120
Score = 50.1 bits (118), Expect = 5e-06
Identities = 31/121 (25%), Positives = 57/121 (46%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ K+++ +ALT I G+G + S + + I +KR ELS +E+ + +
Sbjct: 3 RIAGVDLPKKKRVEYALTYIYGIGLKSSREILEAVGISFDKRVHELSEDEVSSIAKKIQQ 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
S +V + K++ D++ L + N+RG+RH G+ VRG
Sbjct: 63 ----------------------SYLVEGDLRKKVQMDIKSLMDLGNYRGIRHRKGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>BH0160 BH0160 COG0099 [J] Ribosomal protein S13
Length = 121
Score = 50.1 bits (118), Expect = 5e-06
Identities = 35/122 (28%), Positives = 63/122 (50%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ ++++ +LT I GVGR + + KA++ N R +L+ EE+ R+ + V
Sbjct: 3 RIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAV-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+FKV +G + VS +++RL +I +RG+RH G+ VRG
Sbjct: 61 -EEFKV------------EGDLRREVSL--------NIKRLIEIGAYRGIRHRRGLPVRG 99
Query: 504 QH 509
Q+
Sbjct: 100 QN 101
>JHP1216 jhp1216 COG0099 [J] Ribosomal protein S13
Length = 120
Score = 48.5 bits (114), Expect = 2e-05
Identities = 30/121 (24%), Positives = 56/121 (45%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ K+++ +ALT G+G + S + + I +KR ELS +E+ + +
Sbjct: 3 RIAGVDLPKKKRVEYALTCKNGIGLKSSREILEAVGISFDKRVHELSEDEVSSIAKKIQQ 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
S +V + K++ D++ L + N+RG+RH G+ VRG
Sbjct: 63 ----------------------SYLVEGDLRKKVQMDIKSLMDLGNYRGIRHRKGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>AQ_074 aq_074 COG0099 [J] Ribosomal protein S13
Length = 126
Score = 47.8 bits (112), Expect = 3e-05
Identities = 31/121 (25%), Positives = 60/121 (48%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ +++ ALT I G+G + +C+K I KR GEL+ +E++ L +
Sbjct: 3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDELNTLRKFI-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
++YK V + +++ ++++LK + +RG+RH G+ VRG
Sbjct: 61 -------------DENYK-------VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>RP637 RP637 COG0099 [J] Ribosomal protein S13
Length = 125
Score = 45.8 bits (107), Expect = 1e-04
Identities = 30/122 (24%), Positives = 60/122 (48%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ + N+ ++++ +LT I G+G + +C KA I +K+ L+ +E+ L ++ N
Sbjct: 3 RIASVNIPDNKRLVVSLTYIYGLGSTMAAEICNKAKISKDKKVKVLTDQELISLRNIIEN 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+YK V + ++ ++++ K IR ++GLRH + VRG
Sbjct: 63 ---------------EYK-------VEGDLKREVTLNIKKKKDIRCYQGLRHIRKLPVRG 100
Query: 504 QH 509
Q+
Sbjct: 101 QN 102
>PM1393 PM1393 COG0099 [J] Ribosomal protein S13
Length = 118
Score = 45.1 bits (105), Expect = 2e-04
Identities = 32/121 (26%), Positives = 57/121 (46%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ + + ALT+I G+G+ + +C I + + ELS E++D+L V
Sbjct: 3 RIAGINIPDHKHTVIALTAIYGIGKTRAQAICAATGIAEDVKISELSEEQIDKLRDEV-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
G+F+ V + ++ +++RL + +RGLRH G+ VRG
Sbjct: 61 -------------------GKFT--VEGDLRREVTLNIKRLLDLGCYRGLRHRRGLPVRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>HI0799 HI0799 COG0099 [J] Ribosomal protein S13
Length = 122
Score = 44.7 bits (104), Expect = 2e-04
Identities = 33/121 (27%), Positives = 57/121 (46%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ + + ALT+I G+G+ S +C A I + + ELS E++D+L V
Sbjct: 3 RIAGINIPDHKHAVIALTAIYGIGKTRSQAICAAAGIAEDVKIRELSEEQIDKLRDEV-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
G+F+ V + ++ +++RL + +RGLRH + VRG
Sbjct: 61 -------------------GKFT--VEGDLRREVTLNIKRLLDLGCYRGLRHRRSLPVRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>BS_RPSM BS_rpsM COG0099 [J] Ribosomal protein S13
Length = 121
Score = 43.9 bits (102), Expect = 4e-04
Identities = 31/122 (25%), Positives = 62/122 (50%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ ++++ +LT I G+GR + V K+A + + R +L+ EE+ ++ ++
Sbjct: 3 RIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIID- 61
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+ KV +G + VS +++RL +I +RG+RH G+ VRG
Sbjct: 62 --KLKV------------EGDLRREVSL--------NIKRLIEIGTYRGIRHRRGLPVRG 99
Query: 504 QH 509
Q+
Sbjct: 100 QN 101
>MG175 MG175 COG0099 [J] Ribosomal protein S13
Length = 124
Score = 43.1 bits (100), Expect = 6e-04
Identities = 33/121 (27%), Positives = 59/121 (48%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+L ++ +++I ALT I G+G + + KKA I+ +KR +LS EE L+A+
Sbjct: 3 RILGIDIPNQKRIEIALTYIFGIGLSSAKTILKKAKINPDKRVKDLSEEE---LVAI--- 56
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
N YK + + ++ +++ L +I + +G+RH + VRG
Sbjct: 57 ----------RNAASGYK-------IEGDLRREIALNIKHLTEIGSWKGIRHRKNLPVRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>TP0210 TP0210 COG0099 [J] Ribosomal protein S13
Length = 121
Score = 42.4 bits (98), Expect = 0.001
Identities = 35/121 (28%), Positives = 58/121 (47%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ K + ALT I G+ R + +C+KA I +LS +E+ + A++
Sbjct: 3 RIAGVDLPNKH-VSVALTYIYGISRSSARTICEKARISSACLINDLSQDELAVVRAII-- 59
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
R++KV +GR V+ +++RL I +RGLRH G+ VRG
Sbjct: 60 DREYKV------------EGRLRTEVAL--------NIKRLMDIGCYRGLRHRKGLPVRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>RPSM rpsM COG0099 [J] Ribosomal protein S13
Length = 118
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/121 (27%), Positives = 52/121 (42%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ + + ALTSI GVG+ S + A I + + ELS ++D L
Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTL------ 56
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+D VV + ++ ++RL + +RGLRH G+ VRG
Sbjct: 57 -----------------RDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>ZRPSM ZrpsM COG0099 [J] Ribosomal protein S13
Length = 118
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/121 (27%), Positives = 52/121 (42%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ + + ALTSI GVG+ S + A I + + ELS ++D L
Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTL------ 56
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+D VV + ++ ++RL + +RGLRH G+ VRG
Sbjct: 57 -----------------RDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>XF1173 XF1173 COG0099 [J] Ribosomal protein S13
Length = 118
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/121 (25%), Positives = 56/121 (45%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ ++ + L SI G+GR S VC A++ + + +LS E++RL V
Sbjct: 3 RIAGVNLAIQKHVWIGLQSIYGIGRTRSRKVCDAANVAIYTKIRDLSEPEIERLRVEV-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
G++ V+ + ++ ++RL + +RGLRH G+ +RG
Sbjct: 61 -------------------GKY--VIEGDLRREVGMAIKRLMDLNCYRGLRHRRGLPLRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>MLR0323 mlr0323 COG0099 [J] Ribosomal protein S13
Length = 122
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/121 (22%), Positives = 56/121 (45%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ ++++ AL I G+G++F+ + K I +R +L+ E+ ++ +
Sbjct: 3 RIAGVNIPTNKRVVIALQYIHGIGKKFAQEIVDKVGIPAERRVNQLTDAEVLQIRETID- 61
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+DY+ V + ++ +++RL + +RGLRH + VRG
Sbjct: 62 --------------RDYQ-------VEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>MPN189 MPN189 COG0099 [J] Ribosomal protein S13
Length = 124
Score = 41.2 bits (95), Expect = 0.002
Identities = 32/121 (26%), Positives = 56/121 (45%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+L ++ +++I ALT I G+G S + K+A+I+ +KR +L+ EE +
Sbjct: 3 RILGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFVAIR----- 57
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
N YK + + ++ +++ L +I RGLRH + VRG
Sbjct: 58 -----------NVASAYK-------IEGDLRREIALNIKHLSEIGAWRGLRHRKNLPVRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>CJ1592 Cj1592 COG0099 [J] Ribosomal protein S13
Length = 121
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/121 (25%), Positives = 54/121 (44%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ K++I + LT I G+G S + K I +KR ELS +E +
Sbjct: 3 RIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKRVHELSEDEAAAIR----- 57
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
K+ + + +V + ++ D++ L + + RGLRH G+ VRG
Sbjct: 58 -----------------KEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>RV3460C Rv3460c COG0099 [J] Ribosomal protein S13
Length = 124
Score = 40.0 bits (92), Expect = 0.005
Identities = 31/121 (25%), Positives = 56/121 (45%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R++ ++ +++ ALT I G+GR SN + ID + R +L+ E++ L
Sbjct: 3 RLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHL------ 56
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+DY + V + +++ D+ R +I ++GLRH G+ VRG
Sbjct: 57 --------------RDYIEANLK--VEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>VC2574 VC2574 COG0099 [J] Ribosomal protein S13
Length = 118
Score = 39.7 bits (91), Expect = 0.007
Identities = 28/121 (23%), Positives = 53/121 (43%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ + + ALT+I G+G+ S + I + + EL+ E++D+L
Sbjct: 3 RIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQL------ 56
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+DG V + ++ +++RL + +RGLRH + +RG
Sbjct: 57 -----------------RDGVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>BU502 BU502 COG0099 [J] Ribosomal protein S13
Length = 118
Score = 39.7 bits (91), Expect = 0.007
Identities = 28/121 (23%), Positives = 53/121 (43%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ + + ALT+I G+G++ S +C A+I + + +L+ E++D L V
Sbjct: 3 RIAGINIPENKHTLIALTAIYGIGKKRSKFICSIANIPEHSKIVDLNEEQIDLLRTHV-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
V+ + + +++RL + +RGLRH + V G
Sbjct: 61 ---------------------AKYVIEGDLRRERTLNIKRLIDLSCYRGLRHRRSLPVHG 99
Query: 504 Q 506
Q
Sbjct: 100 Q 100
>CC1270 CC1270 COG0099 [J] Ribosomal protein S13
Length = 122
Score = 38.9 bits (89), Expect = 0.012
Identities = 27/121 (22%), Positives = 55/121 (45%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ ++++ AL I G+G++ + + K I+ +R +L+ E+ ++ +
Sbjct: 3 RIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETID- 61
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+DY V + + +++RL + +RGLRH G+ VRG
Sbjct: 62 --------------RDY-------TVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>ML1960 ML1960 COG0099 [J] Ribosomal protein S13
Length = 124
Score = 38.5 bits (88), Expect = 0.016
Identities = 28/121 (23%), Positives = 57/121 (46%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R++ ++ +++ ALT I G+GR +N + + I+ + R +L+ +++ L
Sbjct: 3 RLVGVDLPRDKRMEVALTYIYGIGRTRANEILEATGIERDLRTRDLTDDQLTHL------ 56
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+DY + V + +++ D+ R +I ++GLRH G+ VRG
Sbjct: 57 --------------RDYIEANLK--VEGDLRREVQADIRRKMEIGCYQGLRHRRGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>DR2125 DR2125 COG0099 [J] Ribosomal protein S13
Length = 126
Score = 38.1 bits (87), Expect = 0.020
Identities = 30/121 (24%), Positives = 52/121 (42%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ ++++ ALT I G+G S + + + + R LS E L +
Sbjct: 3 RIAGIDLPREKRVEIALTYIYGIGLTRSKEILARTGVSPDTRVKNLSEAEQSTLREAI-- 60
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+K YK V + ++ +++RL I +RGLRH G+ VRG
Sbjct: 61 -------------EKTYK-------VEGDLRNEVGQNIKRLMDIGAYRGLRHRRGLPVRG 100
Query: 504 Q 506
Q
Sbjct: 101 Q 101
>NMB0165 NMB0165 COG0099 [J] Ribosomal protein S13
Length = 120
Score = 37.4 bits (85), Expect = 0.035
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ I+ L +I G+G + ++C+ A+I + +A +L ++D L
Sbjct: 3 RIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTKAKDLDETQLDALR----- 57
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDD----LERLKKIRNHRGLRHYWGV 491
QV V+ LR + ++RL + +RG RH G+
Sbjct: 58 ----------------------DQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGL 95
Query: 492 RVRGQ 506
RGQ
Sbjct: 96 PCRGQ 100
>NMA0106 NMA0106 COG0099 [J] Ribosomal protein S13
Length = 120
Score = 37.4 bits (85), Expect = 0.035
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ N+ I+ L +I G+G + ++C+ A+I + +A +L ++D L
Sbjct: 3 RIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTKAKDLDETQLDALR----- 57
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDD----LERLKKIRNHRGLRHYWGV 491
QV V+ LR + ++RL + +RG RH G+
Sbjct: 58 ----------------------DQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGL 95
Query: 492 RVRGQ 506
RGQ
Sbjct: 96 PCRGQ 100
>SPY0077 SPy0077 COG0099 [J] Ribosomal protein S13
Length = 121
Score = 37.4 bits (85), Expect = 0.035
Identities = 25/122 (20%), Positives = 56/122 (45%)
Frame = +3
Query: 144 RVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 323
R+ ++ ++++ +LT + G+G S + A I + R +L++++ D + V
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 324 PRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRG 503
+ V + ++ +++RL +I ++RG+RH G+ VRG
Sbjct: 63 IK-----------------------VEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRG 99
Query: 504 QH 509
Q+
Sbjct: 100 QN 101
>MJ1625 MJ1625 COG1293 [K] Predicted RNA-binding protein homologous
to eukaryotic snRNP
Length = 671
Score = 35.0 bits (79), Expect = 0.17
Identities = 26/86 (30%), Positives = 44/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 192 LTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKD 371
++ + G+G ++ +C++A+ID KR +LS EE+ +L N + F NRK
Sbjct: 194 ISRVFGIGGLYAEEICERAEIDKKKR--DLSEEEIKKLFEASKN----LFDEIFNNRKPQ 247
Query: 372 --YKDGRFSQVVSNAVDMKLRDDLER 443
KD + VV +D+K LE+
Sbjct: 248 IVLKDNEYFDVV--PIDLKKYKGLEK 271
>AF2038 AF2038 COG1293 [K] Predicted RNA-binding protein homologous
to eukaryotic snRNP
Length = 627
Score = 31.6 bits (70), Expect = 1.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 198 SIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYK 377
++ G+G ++ VC +A ID K+ ELS +E ++ + F + + DY
Sbjct: 162 AMSGLGGLYAEEVCLRAGIDKKKKYAELSEDERKKIDEEIERLMNFTPKPQIILKDGDYL 221
Query: 378 D 380
D
Sbjct: 222 D 222
>BS_RECN BS_recN COG0497 [L] ATPases involved in DNA repair
Length = 576
Score = 30.8 bits (68), Expect = 3.3
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +3
Query: 177 KIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRL------MAVVHNPRQFK 338
++M A+ SI + ++I+ + D ++ R + AE++ ++ + + H P+
Sbjct: 453 RVMLAIKSIFSSQQDVTSIIFDEVDTGVSGRVAQAIAEKIHKVSIGSQVLCITHLPQVAA 512
Query: 339 VPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLER 443
+ D L K+ KDGR + V + ++ER
Sbjct: 513 MADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIER 547
>SLL0031 sll0031 COG1142 [C] Fe-S-cluster-containing hydrogenase
components 2
Length = 395
Score = 30.8 bits (68), Expect = 3.3
Identities = 31/112 (27%), Positives = 50/112 (43%), Gaps = 6/112 (5%)
Frame = -2
Query: 527 PACSLGVLTTDTHAPVVPQTAMVPDLLEPLKVIPELHVH-GVGHDLGEPPVLVILLPVEE 351
P C G++TT +H V T++VP L L I L +H VGH+ + L PV
Sbjct: 169 PICPQGIITTYSHQATV--TSLVPWL--ELGQIAALEIHTQVGHEERFQQLWRSLAPVLT 224
Query: 350 PIRHLELARVVHHRH----QTVHLLRGKLSGPLV-HVDVGLLADDVGEAAAH 210
++ + ++ H QT+ G L+ P + D ++ D+G H
Sbjct: 225 QLQAIAISCPYHAEAVEYLQTISGWLGPLAMPTIWQTDGRPMSGDIGRGTTH 276
>RV0811C Rv0811c COG0354 [R] Predicted aminomethyltransferase
related to GcvT
Length = 368
Score = 30.4 bits (67), Expect = 4.2
Identities = 17/55 (30%), Positives = 31/55 (55%)
Frame = -2
Query: 401 HDLGEPPVLVILLPVEEPIRHLELARVVHHRHQTVHLLRGKLSGPLVHVDVGLLA 237
H+LG PP +++LL ++E ++ V +TV G+L + HV++G +A
Sbjct: 266 HNLGRPPRMLVLLHLDESVQRPSTGDAVLAGGRTV----GRLGTVVEHVELGPVA 316
>CC3641 CC3641 COG0053 [P] Predicted Co/Zn/Cd cation transporters
Length = 309
Score = 29.3 bits (64), Expect = 9.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 299 VHLLRGKLSGPLVHVDVGL-LADDVGEAAAHTL 204
VH LR + SGP +H+ + LA D+ A AH +
Sbjct: 237 VHQLRTRASGPYIHIQMHADLAGDISLAEAHAI 269
>L151330 L151330 COG0026 [F] Phosphoribosylaminoimidazole
carboxylase (NCAIR synthetase)
Length = 349
Score = 29.3 bits (64), Expect = 9.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 425 ELHVHGV-GHDLGEPPVLVILLPVEEPIRHLELARVVHHRHQTVH 294
+LH+ G+ G DL EP +L + + +H+E + ++H H H
Sbjct: 266 DLHIKGILGEDLPEPKLLKPAIMLNVLGQHVEAVKKLNHEHADWH 310
>SLR0342 slr0342 COG1290 [C] Cytochrome b subunit of the bc complex
Length = 222
Score = 29.3 bits (64), Expect = 9.5
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = +1
Query: 685 GSGTFNILDLEXHVELFTVVLPWALSHLMVWHILSKKKKKLWG 813
GS + L L T VLPWA++ L++ H L +K+ + G
Sbjct: 178 GSESVGQATLTRFYSLHTFVLPWAIAVLLLLHFLMIRKQGISG 220
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33252380
Number of Sequences: 78847
Number of extensions: 635883
Number of successful extensions: 1926
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of query: 295
length of database: 26,228,252
effective HSP length: 49
effective length of query: 245
effective length of database: 22,364,749
effective search space: 5479363505
effective search space used: 5479363505
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)