BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_D03_G05ZS5.seq
(885 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RV0695 Rv0695 COG1402 [R] Uncharacterized protein, putative ami... 33 0.50
YJHT yjhT COG3055 [S] Uncharacterized BCR 30 4.2
MLR7226 mlr7226 COG1175 [G] ABC-type sugar transport systems, p... 30 4.2
YBR208C_3 YBR208c_3 COG1984 [E] Allophanate hydrolase subunit 2 30 4.2
YPR121W_1 YPR121w_1 COG0351 [H] Hydroxymethylpyrimidine/phospho... 29 9.5
>RV0695 Rv0695 COG1402 [R] Uncharacterized protein, putative
amidase
Length = 251
Score = 33.5 bits (75), Expect = 0.50
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +2
Query: 266 GHSATMIEKRLLIFGGRGGTGPIMGDLWALKGITEEDNETPGWTQLKLPGQSPSARCGHS 445
G SA +RL+ G GG +G L G+ + GW PG P A GH+
Sbjct: 112 GRSAACWARRLVFVNGHGGN---VGALTRAVGLLRAEGRDAGWCPCTCPGGDPHA--GHT 166
Query: 446 VTS 454
TS
Sbjct: 167 ETS 169
>YJHT yjhT COG3055 [S] Uncharacterized BCR
Length = 404
Score = 30.4 bits (67), Expect = 4.2
Identities = 32/134 (23%), Positives = 53/134 (38%), Gaps = 10/134 (7%)
Frame = +2
Query: 116 AAASAIGNRKIVMYGGWDGKKWLSDVYVMDTMSLE--WT*LAVTGSAPPPRCGHSATMIE 289
+ AI N + + G G W Y +DT + + WT LA P + ++ I+
Sbjct: 67 SGTGAIDNDTVYIGLGSAGTAW----YKLDTQAKDKKWTALAAFPGGPRDQA--TSAFID 120
Query: 290 KRLLIFGGRGGTGPIMGDLWALKGITEEDNETPGWTQLKLPGQSPSARCGH--------S 445
L +FGG G G + + + +T W +KL +P GH +
Sbjct: 121 GNLYVFGGIGKNSE--GLTQVFNDVHKYNPKTNSW--VKLMSHAPMGMAGHVTFVHNGKA 176
Query: 446 VTSGGPYLLLFGGH 487
+GG +F G+
Sbjct: 177 YVTGGVNQNIFNGY 190
>MLR7226 mlr7226 COG1175 [G] ABC-type sugar transport systems,
permease components
Length = 298
Score = 30.4 bits (67), Expect = 4.2
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = -1
Query: 591 WIMTGGKRFH*TETLYKITHSL*YTSYLLSQ 499
WI TGG + TE L T+ L ++SY LSQ
Sbjct: 242 WITTGGGPIYSTEVLSTYTYKLAFSSYNLSQ 272
>YBR208C_3 YBR208c_3 COG1984 [E] Allophanate hydrolase subunit 2
Length = 356
Score = 30.4 bits (67), Expect = 4.2
Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Frame = +3
Query: 90 AICRLPGSLLP-HQP*ETEKLSCMVVGMAKSGCLMYM 197
A+C L G +P H+P E ++ S + +G SGC Y+
Sbjct: 77 ALCTLDGQEIPQHKPVEVKRGSTLSIGKLTSGCRAYL 113
>YPR121W_1 YPR121w_1 COG0351 [H]
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
Length = 308
Score = 29.3 bits (64), Expect = 9.5
Identities = 17/48 (35%), Positives = 24/48 (49%)
Frame = -2
Query: 866 PCVMAIDIMEDSKGMGCDITVK*DXGTCTWYRCK*LRCGTNSRAQVPI 723
P VM+I + S G G + +K T T +RC + C T AQ P+
Sbjct: 46 PTVMSIAGSDSSGGAGVEADIK----TITAHRCYAMTCVTTLTAQTPV 89
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44512723
Number of Sequences: 78847
Number of extensions: 989119
Number of successful extensions: 2210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of query: 295
length of database: 26,228,252
effective HSP length: 49
effective length of query: 245
effective length of database: 22,364,749
effective search space: 5479363505
effective search space used: 5479363505
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)