BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_D04_G07ZS5.seq
         (888 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YGL030W YGL030w  COG1911 [J] Ribosomal protein L30E                    72  9e-21
MTH1053 MTH1053  COG1911 [J] Ribosomal protein L30E                    61  3e-09
PHS043 PHs043  COG1911 [J] Ribosomal protein L30E                      58  2e-08
PAB7152 PAB7152  COG1911 [J] Ribosomal protein L30E                    58  2e-08
APE1851 APE1851  COG1911 [J] Ribosomal protein L30E                    49  8e-07
MJ1044 MJ1044  COG1911 [J] Ribosomal protein L30E                      52  1e-06
AF1890 AF1890  COG1911 [J] Ribosomal protein L30E                      38  0.027

>YGL030W YGL030w  COG1911 [J] Ribosomal protein L30E
          Length = 105

 Score = 72.4 bits (176), Expect(2) = 9e-21
 Identities = 36/61 (59%), Positives = 46/61 (75%)
 Frame = +2

Query: 197 QLQGKLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDP 376
           Q + KLII+A N P LRKSE+EYYAML+K  V++F G N +LGTA GK +RV  +SIL+ 
Sbjct: 36  QGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEA 95

Query: 377 G 379
           G
Sbjct: 96  G 96



 Score = 47.4 bits (111), Expect(2) = 9e-21
 Identities = 22/31 (70%), Positives = 27/31 (86%)
 Frame = +3

Query: 105 KSGENINNKLQLVMKSGKYTLGYKTVLKTLR 197
           KS E+IN KL LV+KSGKYTLGYK+ +K+LR
Sbjct: 5   KSQESINQKLALVIKSGKYTLGYKSTVKSLR 35



>MTH1053 MTH1053  COG1911 [J] Ribosomal protein L30E
          Length = 98

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +2

Query: 203 QGKLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 379
           +GKL+++A+N P   K +IEYYA L++I V+   G +V+LG+ CGK + V  L I DPG
Sbjct: 31  KGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPG 89



>PHS043 PHs043  COG1911 [J] Ribosomal protein L30E
          Length = 99

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 29/57 (50%), Positives = 38/57 (65%)
 Frame = +2

Query: 209 KLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 379
           KLII+A N P   K +I YYA L+ I V+ F G +V+LGT  GK + V  L+I+DPG
Sbjct: 33  KLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPG 89



>PAB7152 PAB7152  COG1911 [J] Ribosomal protein L30E
          Length = 99

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 29/57 (50%), Positives = 38/57 (65%)
 Frame = +2

Query: 209 KLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 379
           KLII+A N P   K +I YYA L+ I V+ F G +V+LGT  GK + V  L+I+DPG
Sbjct: 33  KLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPG 89



>APE1851 APE1851  COG1911 [J] Ribosomal protein L30E
          Length = 102

 Score = 49.3 bits (116), Expect(2) = 8e-07
 Identities = 21/59 (35%), Positives = 36/59 (60%)
 Frame = +2

Query: 203 QGKLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 379
           + K I++A N PP  + ++EYYA LA I +  + G  +D+G   G+ + V  L+++D G
Sbjct: 33  EAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEG 91



 Score = 23.1 bits (48), Expect(2) = 8e-07
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 117 NINNKLQLVMKSGKYTLGYKTVLKTLR 197
           ++   L+ ++K+G Y +G+K  LK ++
Sbjct: 4   SVEKALKDLVKTGVYAMGFKQSLKAVK 30



>MJ1044 MJ1044  COG1911 [J] Ribosomal protein L30E
          Length = 110

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 23/59 (38%), Positives = 37/59 (61%)
 Frame = +2

Query: 203 QGKLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 379
           +GKL++LA N P   + +++YYA L+ I V+     +++LG  CGK + V  L +LD G
Sbjct: 37  EGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEG 95



>AF1890 AF1890  COG1911 [J] Ribosomal protein L30E
          Length = 86

 Score = 37.7 bits (86), Expect = 0.027
 Identities = 20/57 (35%), Positives = 35/57 (61%)
 Frame = +2

Query: 203 QGKLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILD 373
           + K +I+A+NCP     +I+ Y +  KI V  ++G N++LG  CGK + V  ++I +
Sbjct: 32  EAKAVIVASNCPEEVLEKIKSYDV--KILV--YNGTNMELGALCGKPFSVAAMAITE 84



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23187982
Number of Sequences: 78847
Number of extensions: 372645
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of query: 296
length of database: 26,228,252
effective HSP length: 49
effective length of query: 246
effective length of database: 22,364,749
effective search space: 5501728254
effective search space used: 5501728254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)