BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_D05_G09ZS5.seq
(934 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CDA6753 CDa6753 COG3491 [R] Isopenicillin N synthase and relate... 55 1e-07
PA4191 PA4191 COG3491 [R] Isopenicillin N synthase and related ... 53 9e-07
MLR6892 mlr6892 COG3491 [R] Isopenicillin N synthase and relate... 53 9e-07
CC0200 CC0200 COG3491 [R] Isopenicillin N synthase and related ... 46 1e-04
PA0147 PA0147 COG3491 [R] Isopenicillin N synthase and related ... 42 0.001
JHP0626 jhp0626 COG1629 [P] Outer membrane receptor proteins, m... 34 0.41
CJ1199 Cj1199 COG3491 [R] Isopenicillin N synthase and related ... 32 2.0
MLR7803 mlr7803 COG0596 [R] Predicted hydrolases or acyltransfe... 31 3.5
CJ0699C Cj0699c COG0174 [E] Glutamine synthase 30 4.5
>CDA6753 CDa6753 COG3491 [R] Isopenicillin N synthase and related
dioxygenases
Length = 373
Score = 55.5 bits (132), Expect = 1e-07
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Frame = +3
Query: 171 ELPVVDMARLLHPELSEAEIANLGSACRDWGFFQLTNH---GVDETVVQDMKDNTLQFFG 341
E+P++D+ P + + A + GF L N+ G E +Q +K ++FF
Sbjct: 5 EIPIIDLQEAFDPATRSKFLEEVRDAIINVGFLLLKNYESLGPTEEDLQSIKQQAIEFFA 64
Query: 342 LPL-EKKKAVAIQVNGFEGFGHHYNRASSEKLDWAESLILVTQ-------QHEQRNIQ-- 491
LP EK + + F G+ N ++ DW E + L T+ + +NI+
Sbjct: 65 LPAKEKLQCEMLNSPHFLGYTRLANEITASHTDWREQIDLATELPAPKEGEPLYKNIEGP 124
Query: 492 -FWPANPST---FRDALDKYSVEMSNLTSRLTVFMASDLGVEQEAL 617
WP NP FR ++++ +M+ L++ +A +GV+ +AL
Sbjct: 125 NLWP-NPEVIPKFRPTIERFIEKMTALSNVFKDLVAESIGVDPKAL 169
>PA4191 PA4191 COG3491 [R] Isopenicillin N synthase and related
dioxygenases
Length = 334
Score = 52.8 bits (125), Expect = 9e-07
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Frame = +3
Query: 174 LPVVDMARLL--HPELSEAEIANLGSACRDWGFFQLTNHGVDETVVQDMKDNTLQFFGLP 347
LP++D+A L P + + ACR+ GFF + HGV+ +V+ ++ QFF L
Sbjct: 6 LPIIDIAALAGSDPAARRSVAVRIDRACREQGFFYVVGHGVEAQLVERLERLARQFFALD 65
Query: 348 LEKKKAVAIQVNG--FEGFGHHYNRASSEKLDWAESLILVTQ---QHEQ-------RNIQ 491
K +++ G + G+ +S + DW E L L ++ +H +
Sbjct: 66 ETSKLRWRMELGGRAWRGYFPLGGELTSNRPDWKEGLYLGSELDAEHPEVRAGTPLHGAN 125
Query: 492 FWPANPSTFRDALDKYSVEMSNLTSRLTVFMASDLGVEQEALMGTFXG 635
+P P R+ L +Y + + RL +A LG+E + + G
Sbjct: 126 LFPEVPG-LRETLLEYLDATTRVGHRLMEGIALGLGLEADYFAARYTG 172
>MLR6892 mlr6892 COG3491 [R] Isopenicillin N synthase and related
dioxygenases
Length = 366
Score = 52.8 bits (125), Expect = 9e-07
Identities = 56/234 (23%), Positives = 93/234 (38%), Gaps = 24/234 (10%)
Frame = +3
Query: 174 LPVVDMARLLHPELSEAE----IANLGSACRDWGFFQLTNHGVDETVVQDMKDNTLQFFG 341
+PV+D++RL E +E +A+L SA RD GFF L HG+ + ++ + QFF
Sbjct: 32 VPVLDLSRL---EQGASERRTFLADLRSASRDIGFFYLAGHGISWAEISEVLTASRQFFA 88
Query: 342 LPLEKKKAV-AIQVNGFEGFGHHYNRASSEKLDWAESLILVTQQH------------EQR 482
LP K A+ ++ + F G+ + + DW E L + ++ +
Sbjct: 89 LPEADKLAIEMVKSSQFRGYTRAGGELTKGREDWREQLDIGVERQAIAQGPGTPAWTRLQ 148
Query: 483 NIQFWPANPSTFRDALDKYSVEMSNLTSRLTVFMASDLGVEQEALMGTFXGKTXSVAFHY 662
WPA + AL + +++ + RL A L ++A F S H
Sbjct: 149 GPNQWPAALPDLKPALLAWQSKVTAVAIRLLKAFAQSLDQPEDA----FDPIYSSEPNHR 204
Query: 663 YPSCRHP-------DKVIGITPXXXXXXXXXXXXXXXXPGLQVEENGRWYPLKP 803
R+P D+ +G GLQV+ +G W + P
Sbjct: 205 MKIVRYPGRDTTGGDQGVG---AHKDGGFLTLLLQDDNKGLQVDYDGSWVDVDP 255
>CC0200 CC0200 COG3491 [R] Isopenicillin N synthase and related
dioxygenases
Length = 311
Score = 45.8 bits (107), Expect = 1e-04
Identities = 50/240 (20%), Positives = 88/240 (35%), Gaps = 14/240 (5%)
Frame = +3
Query: 237 LGSACRDWGFFQLTNHGVDETVVQDMKDNTLQFFGLPLEKKKAVAIQVNGFEGFGHHYNR 416
LG++ +GF L+++ +D+ + D+ FF LP+E KK Q G +G Y
Sbjct: 25 LGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKK----QYAGVKGGARGYIP 80
Query: 417 ASSEKLDWAESLILVTQQHEQRNI------------QFWPANPSTFRDALDKYSVEMSNL 560
E A+ L H R++ WPA F+ + + +
Sbjct: 81 FGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGM 140
Query: 561 TSRLTVFMASDLGVEQEALMGTFXGKTXSVAFHYYPSCRHPDKVIGITPXXXXXXXXXXX 740
++ +A+ L +E++ T + +YP P G+
Sbjct: 141 GGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPI--PKDATGVRAGAHGDINTITL 198
Query: 741 XXXXXP-GLQV-EENGRWYPLKPPCQAPFLFKFGDFFPDPSQMSPSKTPQPRVPPEPQKR 914
GL+V + +G+W P+ PP + GD + T V P P++R
Sbjct: 199 LLGAEEGGLEVLDRDGQWLPINPP-PGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERR 257
>PA0147 PA0147 COG3491 [R] Isopenicillin N synthase and related
dioxygenases
Length = 320
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = +3
Query: 174 LPVVDMARLLHPELSE-AEIAN-LGSACRDWGFFQLTNHGVDETVVQDMKDNTLQFFGLP 347
LP++D+A L + ++A + ACR+WGFF + H + + + +FF LP
Sbjct: 4 LPIIDIAPLYGADRGAWNDVARRIDQACREWGFFYIAGHPLPAARFEALLAAAREFFALP 63
Query: 348 LEKKKAVAI-QVNGFEGFGHHYNRASSEKLDWAESLILVTQQHEQRNIQFWPANPSTFRD 524
+E+K + I + G+G ++E+LD PA PS F++
Sbjct: 64 VEEKLKIDITRSRNHRGYG----AIATEQLD--------------------PALPSDFKE 99
Query: 525 ALD 533
D
Sbjct: 100 TFD 102
>JHP0626 jhp0626 COG1629 [P] Outer membrane receptor proteins,
mostly Fe transport
Length = 767
Score = 33.9 bits (76), Expect = 0.41
Identities = 19/72 (26%), Positives = 34/72 (46%)
Frame = +3
Query: 261 GFFQLTNHGVDETVVQDMKDNTLQFFGLPLEKKKAVAIQVNGFEGFGHHYNRASSEKLDW 440
GFF + +D+++V +M NT G + K + QVN +G G YN + +
Sbjct: 190 GFFNQNSKNIDKSLVNNMLFNTYLRTGGMMNKHFGIQAQVNWLKGQGFRYNSPTDIQNYM 249
Query: 441 AESLILVTQQHE 476
+SL + ++
Sbjct: 250 LDSLYQINDSNK 261
>CJ1199 Cj1199 COG3491 [R] Isopenicillin N synthase and related
dioxygenases
Length = 330
Score = 31.6 bits (70), Expect = 2.0
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Frame = +3
Query: 174 LPVVDMARLLHPELSEAEIANLGSACRDWGFFQLTNHGVDETVVQDMKDNTLQFFGLPLE 353
LP++D+ + + + NL GFF L N +D+ + + + +FF L
Sbjct: 3 LPILDLQA--YEKDKSTFLKNLREIASKIGFFYLINTSIDKNLNEKLFKLGKEFFNLSRS 60
Query: 354 KKKAVAI----QVNGFEGFGHHYNRASSEKLDWAESLILVTQQ 470
K+ +++ Q G+ G Y S D+ E L + T++
Sbjct: 61 SKELISMVHSPQFRGYTSEGFEYTAGSK---DYREQLDIGTER 100
>MLR7803 mlr7803 COG0596 [R] Predicted hydrolases or
acyltransferases (alpha/beta hydrol
Length = 318
Score = 30.8 bits (68), Expect = 3.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 803 GFKGVPPAVFLHLQPGGVIHVQQQR 729
G KG PAVFLH PGG I + +R
Sbjct: 34 GTKGAKPAVFLHGGPGGTISPKHRR 58
>CJ0699C Cj0699c COG0174 [E] Glutamine synthase
Length = 476
Score = 30.4 bits (67), Expect = 4.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 643 CVLPWKVPMR-ASCSTPRSLAMNTVRRLVRFDIST--EYLSSASLNVDGLAG 497
C+L + R ASC P + N+ R +RF ST YL+ SL + GL G
Sbjct: 337 CILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDG 388
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40553015
Number of Sequences: 78847
Number of extensions: 788751
Number of successful extensions: 2244
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2234
length of query: 311
length of database: 26,228,252
effective HSP length: 49
effective length of query: 261
effective length of database: 22,364,749
effective search space: 5837199489
effective search space used: 5837199489
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)