BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_D08_G15ZS5.seq
(918 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TP0542 TP0542 COG0205 [G] 6-phosphofructokinase 119 8e-37
BB0020 BB0020 COG0205 [G] 6-phosphofructokinase 99 7e-32
CPN0160 CPn0160 COG0205 [G] 6-phosphofructokinase 95 5e-30
CT207 CT207 COG0205 [G] 6-phosphofructokinase 90 2e-28
CPN0208 CPn0208 COG0205 [G] 6-phosphofructokinase 76 4e-23
CT205 CT205 COG0205 [G] 6-phosphofructokinase 74 2e-22
BB0727 BB0727 COG0205 [G] 6-phosphofructokinase 43 9e-04
TM0289 TM0289 COG0205 [G] 6-phosphofructokinase 32 0.002
TP0108 TP0108 COG0205 [G] 6-phosphofructokinase 39 0.012
RV3010C Rv3010c COG0205 [G] 6-phosphofructokinase 35 0.14
TM0209 TM0209 COG0205 [G] 6-phosphofructokinase 33 0.68
ML1701 ML1701 COG0205 [G] 6-phosphofructokinase 33 0.68
MPN401 MPN401 COG0782 [K] Transcription elongation factor 32 2.0
NMB0506 NMB0506 COG3210 [M] Putative hemagglutinin/hemolysin 31 2.6
NMA0692 NMA0692 COG3210 [M] Putative hemagglutinin/hemolysin 31 2.6
CT755 CT755 COG0459 [O] Chaperonin GroEL (HSP60 family) 31 3.4
JHP1323 jhp1323 COG0595 [R] Predicted hydrolase of the metallo-... 30 4.4
>TP0542 TP0542 COG0205 [G] 6-phosphofructokinase
Length = 573
Score = 119 bits (297), Expect(2) = 8e-37
Identities = 64/127 (50%), Positives = 76/127 (59%)
Frame = +1
Query: 55 DYLQERAKGSTMYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QF 234
D L+ S + GF GGPAGV+ G ++E+ D V YRN GGFD+I SGR KIE QF
Sbjct: 104 DGLKRWHADSVLIGFLGGPAGVLSGDHIEICADRVDAYRNTGGFDLIGSGRTKIESESQF 163
Query: 235 QQAEDTVNRXXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVP 414
A TV R SNTNA LL E+F + T+VIG PKTIDGDLK + +
Sbjct: 164 AAAAQTVTRMALDALVVVGGDDSNTNAALLAEHFVNSGISTKVIGVPKTIDGDLKNEAIE 223
Query: 415 TSFGFDT 435
TSFGFDT
Sbjct: 224 TSFGFDT 230
Score = 54.7 bits (130), Expect(2) = 8e-37
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +2
Query: 413 QQALGLTLACMIYSEMIGNVMTDALSTGNYYHFVMLMGRAAFSIILECALQ 565
+ + G A YSE+IGN+ DA S Y+HF+ LMGR+A I LECAL+
Sbjct: 223 ETSFGFDTATKTYSELIGNIARDACSARKYWHFIKLMGRSASHIALECALK 273
>BB0020 BB0020 COG0205 [G] 6-phosphofructokinase
Length = 555
Score = 99.0 bits (245), Expect(2) = 7e-32
Identities = 50/127 (39%), Positives = 70/127 (54%)
Frame = +1
Query: 55 DYLQERAKGSTMYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QF 234
D +++ S ++GFKGGP G+++ +ELT + YRN GGFD++ SGR KIE +
Sbjct: 96 DAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHY 155
Query: 235 QQAEDTVNRXXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVP 414
+A SNTNA +L EYF+ +VIG PKTID DL+ +
Sbjct: 156 NKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIE 215
Query: 415 TSFGFDT 435
SFGFD+
Sbjct: 216 ISFGFDS 222
Score = 58.2 bits (139), Expect(2) = 7e-32
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +2
Query: 419 ALGLTLACMIYSEMIGNVMTDALSTGNYYHFVMLMGRAAFSIILECALQ 565
+ G A IYSE+IGN+ DA+ST Y+HFV LMGR+A + LECAL+
Sbjct: 217 SFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALK 265
>CPN0160 CPn0160 COG0205 [G] 6-phosphofructokinase
Length = 555
Score = 94.7 bits (234), Expect(2) = 5e-30
Identities = 50/116 (43%), Positives = 65/116 (55%)
Frame = +1
Query: 88 MYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QFQQAEDTVNRXX 267
++GF GP G+ +G Y +L +Y Y N GGFDM+ S R+KI+ Q + +TV +
Sbjct: 107 LFGFIKGPLGLTRGLYKDLDISVIYDYYNMGGFDMLSSSREKIKTEEQKKNILNTVKQLK 166
Query: 268 XXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGFDT 435
SNT+ +L EYF N KT VIG PKTIDGDLK + TS GF T
Sbjct: 167 LDGLLIIGGNNSNTDTAMLAEYFLAHNCKTSVIGVPKTIDGDLKNCWIETSLGFHT 222
Score = 56.2 bits (134), Expect(2) = 5e-30
Identities = 26/51 (50%), Positives = 33/51 (63%)
Frame = +2
Query: 413 QQALGLTLACMIYSEMIGNVMTDALSTGNYYHFVMLMGRAAFSIILECALQ 565
+ +LG +C YSEMIGN+ DALS Y+HF+ LMG+ A LEC LQ
Sbjct: 215 ETSLGFHTSCRTYSEMIGNLAKDALSAKKYHHFIRLMGQQASYTTLECGLQ 265
>CT207 CT207 COG0205 [G] 6-phosphofructokinase
Length = 548
Score = 90.1 bits (222), Expect(2) = 2e-28
Identities = 49/120 (40%), Positives = 64/120 (52%)
Frame = +1
Query: 76 KGSTMYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QFQQAEDTV 255
K + ++GF GP G+++G Y +L +Y Y N GGFDM+ S R+KI+ Q TV
Sbjct: 103 KETKLFGFIKGPLGLIRGLYKDLDISVIYDYYNAGGFDMLSSSREKIKTKEQKSAILATV 162
Query: 256 NRXXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGFDT 435
+ SNT+ +L EYF N T VIG PKTIDGDLK + T GF T
Sbjct: 163 KKMKLHGLLIVGGDNSNTDTAMLAEYFIEHNCPTAVIGVPKTIDGDLKNAWIETPLGFHT 222
Score = 55.5 bits (132), Expect(2) = 2e-28
Identities = 27/48 (56%), Positives = 30/48 (62%)
Frame = +2
Query: 422 LGLTLACMIYSEMIGNVMTDALSTGNYYHFVMLMGRAAFSIILECALQ 565
LG +C YSEMIGN+ D LST Y+HFV LMG A LEC LQ
Sbjct: 218 LGFHTSCRTYSEMIGNLEKDVLSTRKYHHFVKLMGEQASHSTLECGLQ 265
>CPN0208 CPn0208 COG0205 [G] 6-phosphofructokinase
Length = 550
Score = 75.9 bits (185), Expect(2) = 4e-23
Identities = 42/118 (35%), Positives = 60/118 (50%)
Frame = +1
Query: 82 STMYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QFQQAEDTVNR 261
S++ GF G+ K +++T +F+ +RN GGF+ I +GR KI + T
Sbjct: 103 SSLVGFVNNGDGLTNNKSIDITEEFLSKFRNSGGFNCIGTGRKKIVTPEAKEACLKTAEA 162
Query: 262 XXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGFDT 435
SNT +L EYF R KT ++G PKTIDGDL+ + +FGFDT
Sbjct: 163 LDLDGLVIIGGDGSNTATAILAEYFAKRRPKTSIVGVPKTIDGDLQHTFLDLTFGFDT 220
Score = 52.0 bits (123), Expect(2) = 4e-23
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +2
Query: 425 GLTLACMIYSEMIGNVMTDALSTGNYYHFVMLMGRAAFSIILECALQ 565
G A YS +I N+ DALS +YHF+ LMGR+A I LECALQ
Sbjct: 217 GFDTATKFYSSIISNISRDALSCKAHYHFIKLMGRSASHIALECALQ 263
>CT205 CT205 COG0205 [G] 6-phosphofructokinase
Length = 553
Score = 73.9 bits (180), Expect(2) = 2e-22
Identities = 42/118 (35%), Positives = 58/118 (48%)
Frame = +1
Query: 82 STMYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QFQQAEDTVNR 261
S + GF G++ VE+T +F+ +RN GGF+ I +GR I + T N
Sbjct: 105 SQLLGFIRNGEGLLNNNTVEITDEFIEEFRNSGGFNCIGTGRTNIITEENKARCLQTANE 164
Query: 262 XXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGFDT 435
SNT +L EYF KT ++G PKTIDGDL+ + +FGFDT
Sbjct: 165 LDLDGLVIIGGDGSNTATAILAEYFAKHQAKTVLVGVPKTIDGDLQHLFLDLTFGFDT 222
Score = 51.6 bits (122), Expect(2) = 2e-22
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2
Query: 425 GLTLACMIYSEMIGNVMTDALSTGNYYHFVMLMGRAAFSIILECALQ 565
G A YS +I N+ DALS +YHF+ LMGR++ I LECALQ
Sbjct: 219 GFDTATKFYSSIISNISRDALSCKGHYHFIKLMGRSSSHITLECALQ 265
>BB0727 BB0727 COG0205 [G] 6-phosphofructokinase
Length = 448
Score = 42.7 bits (99), Expect = 9e-04
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Frame = +1
Query: 88 MYGFKGGPAGVM---KGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QFQQAEDTVN 258
+YG K G G++ ++ L D V GG ++ S R I+ + DT+
Sbjct: 114 IYGVKFGYQGLLPESNSPFINLNPDVVDDINKFGG-TILGSSRGGIKPV----EIVDTLE 168
Query: 259 RXXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGFDTC 438
R + + L+ E RNLK V+G PKT+D D V SFGF+T
Sbjct: 169 RMNINMIFNIGGDGTQKGSLLIAEEIEKRNLKIAVVGIPKTVDNDFMF--VQKSFGFETA 226
Query: 439 L 441
+
Sbjct: 227 V 227
>TM0289 TM0289 COG0205 [G] 6-phosphofructokinase
Length = 419
Score = 32.0 bits (71), Expect(2) = 0.002
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 358 RVIGCPKTIDGDLKCKEVPTSFGFDTCLH 444
+V+ PKTID DL E +FGF+T H
Sbjct: 125 KVVHVPKTIDNDLPLPENMPTFGFETARH 153
Score = 28.5 bits (62), Expect(2) = 0.002
Identities = 15/42 (35%), Positives = 25/42 (58%)
Frame = +2
Query: 425 GLTLACMIYSEMIGNVMTDALSTGNYYHFVMLMGRAAFSIIL 550
G A + +E++ N+M D+ +T +Y FV +MGR A + L
Sbjct: 147 GFETARHVATELVYNLMQDSRTTNRWY-FVAMMGREAGHLAL 187
>TP0108 TP0108 COG0205 [G] 6-phosphofructokinase
Length = 461
Score = 38.9 bits (89), Expect = 0.012
Identities = 20/47 (42%), Positives = 27/47 (56%)
Frame = +1
Query: 301 SNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGFDTCL 441
S A + + + RNLK +IG PKT+D D+ V SFGFDT +
Sbjct: 185 SQKGAKEIADEIKHRNLKISIIGIPKTVDNDISF--VQKSFGFDTAI 229
>RV3010C Rv3010c COG0205 [G] 6-phosphofructokinase
Length = 343
Score = 35.4 bits (80), Expect = 0.14
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +1
Query: 79 GSTMYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGR---DKIEFF*QFQQAED 249
GS++ GF+ G G+++ + V+L D G M+ + R DK+ Q
Sbjct: 31 GSSVVGFQNGFRGLLENRRVQLHNDDRNDRLLAKGGTMLGTARVHPDKLRA--GLPQIMQ 88
Query: 250 TVNRXXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGF 429
T++ + T A L E V+G PKTID D+ C +V +FG
Sbjct: 89 TLDDNGIDVLIPIGGEGTLTAASWLSEE------NVPVVGVPKTIDNDIDCTDV--TFGH 140
Query: 430 DTCL 441
DT L
Sbjct: 141 DTAL 144
>TM0209 TM0209 COG0205 [G] 6-phosphofructokinase
Length = 319
Score = 33.1 bits (74), Expect = 0.68
Identities = 31/125 (24%), Positives = 53/125 (41%)
Frame = +1
Query: 76 KGSTMYGFKGGPAGVMKGKYVELTTDFVYPYRNQGGFDMICSGRDKIEFF*QFQQAEDTV 255
+G + G + G +G++ G +V+L V +GG + S ++ + + A +
Sbjct: 30 QGLEVIGVRRGYSGLIDGDFVKLEYKDVAGITEKGGTILRTSRCEEFKTEEGRELAAKQI 89
Query: 256 NRXXXXXXXXXXXXXSNTNACLLGEYFRGRNLKTRVIGCPKTIDGDLKCKEVPTSFGFDT 435
+ S T A LL E K V+G P TID D+ ++ G DT
Sbjct: 90 KKHGIEGLVVIGGEGSLTGAHLLYEEH-----KIPVVGIPATIDNDIGLTDM--CIGVDT 142
Query: 436 CLHDI 450
CL+ +
Sbjct: 143 CLNTV 147
>ML1701 ML1701 COG0205 [G] 6-phosphofructokinase
Length = 343
Score = 33.1 bits (74), Expect = 0.68
Identities = 15/27 (55%), Positives = 19/27 (69%)
Frame = +1
Query: 361 VIGCPKTIDGDLKCKEVPTSFGFDTCL 441
V+G PKTID D+ C +V +FG DT L
Sbjct: 120 VVGVPKTIDNDIDCTDV--TFGHDTAL 144
>MPN401 MPN401 COG0782 [K] Transcription elongation factor
Length = 160
Score = 31.6 bits (70), Expect = 2.0
Identities = 23/91 (25%), Positives = 42/91 (45%)
Frame = -3
Query: 712 QGDKK*NNNTRKIEGKK*TVKENMNKMRDKSIEVQKGRSDSTKRENKGDLKSTLKDNGKS 533
QGD N + + ++ ++ + +++D V+ TK+ NK L ST++ S
Sbjct: 41 QGDLSENADYDAAKAQQGEIETRIAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYS 100
Query: 532 STTHKHHKVVVIAC*QGISHDIANHFGIYHA 440
S TH+ + +V H I+N + HA
Sbjct: 101 SKTHEKYTIVGALEANPEEHRISNESPLAHA 131
>NMB0506 NMB0506 COG3210 [M] Putative hemagglutinin/hemolysin
Length = 506
Score = 31.2 bits (69), Expect = 2.6
Identities = 25/72 (34%), Positives = 34/72 (46%), Gaps = 8/72 (11%)
Frame = -3
Query: 577 NKGDLKSTLKDNGKSSTTHKHHKVVVIA-C*QGIS-------HDIANHFGIYHASKCQTQ 422
NKGD+ TLK+ GKSST + V A QGIS ++ HF A K T
Sbjct: 92 NKGDINHTLKELGKSSTVRQAATAAVTAGVLQGISGLNTQAAEAVSKHFHSPAAGKL-TA 150
Query: 421 SLLGPPCISDLH 386
+L+ + +H
Sbjct: 151 NLINSTAAASVH 162
>NMA0692 NMA0692 COG3210 [M] Putative hemagglutinin/hemolysin
Length = 833
Score = 31.2 bits (69), Expect = 2.6
Identities = 25/72 (34%), Positives = 34/72 (46%), Gaps = 8/72 (11%)
Frame = -3
Query: 577 NKGDLKSTLKDNGKSSTTHKHHKVVVIA-C*QGIS-------HDIANHFGIYHASKCQTQ 422
NKGD+ TLK+ GKSST + V A QGIS ++ HF A K T
Sbjct: 419 NKGDINHTLKELGKSSTVRQAATAAVTAGVLQGISGLNTQAAEAVSKHFHSPAAGKL-TA 477
Query: 421 SLLGPPCISDLH 386
+L+ + +H
Sbjct: 478 NLINSTAAASVH 489
>CT755 CT755 COG0459 [O] Chaperonin GroEL (HSP60 family)
Length = 512
Score = 30.8 bits (68), Expect = 3.4
Identities = 26/85 (30%), Positives = 36/85 (41%), Gaps = 5/85 (5%)
Frame = -1
Query: 330 FTEEACVSV*IITTDDNKSIQIKSVDCVFSLLELLKKFD-----LVPSTADHIKSALVSV 166
F E V+ I TD + + C+F L LLKKF L+ + L +
Sbjct: 201 FHENPIVAPKIFVTD-------QKIHCLFPFLPLLKKFSEEQTPLIIFCKEIAPDPLATC 253
Query: 165 GVHEISGQLDVLALHDPSWASLESI 91
+ I+G LDVL + P LE I
Sbjct: 254 IANRIAGLLDVLVVTIPDTTLLEDI 278
>JHP1323 jhp1323 COG0595 [R] Predicted hydrolase of the
metallo-beta-lactamase superfami
Length = 692
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -2
Query: 659 NSKRKHEQDER*IDRGAKRQKRF--NEERK*GGSEEHTQG*WKKQHDP*ASQSGSNCLLT 486
NSK HE +R R+KRF N ++ S T KK+H P ++ +N
Sbjct: 17 NSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKEHRP--NKKPNNHHKP 74
Query: 485 GHQS*HCQSFRNISCKQVSNPKLVGTS 405
H S Q RN + +++ N K+ G +
Sbjct: 75 KHAS---QKTRNYAKEELDNNKVEGVT 98
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33794545
Number of Sequences: 78847
Number of extensions: 615299
Number of successful extensions: 1651
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of query: 306
length of database: 26,228,252
effective HSP length: 49
effective length of query: 256
effective length of database: 22,364,749
effective search space: 5725375744
effective search space used: 5725375744
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)