BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_D09_G17ZS5.seq
(962 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
APE1911 APE1911 COG1131 [Q] ABC-type multidrug transport system... 33 0.95
DR2417 DR2417 COG0595 [R] Predicted hydrolase of the metallo-be... 32 1.2
NMB1214 NMB1214 COG3210 [M] Putative hemagglutinin/hemolysin 31 2.8
RV2848C Rv2848c COG1797 [H] Cobyrinic acid a,c-diamide synthase 30 4.7
>APE1911 APE1911 COG1131 [Q] ABC-type multidrug transport system,
ATPase component
Length = 284
Score = 32.7 bits (73), Expect = 0.95
Identities = 25/68 (36%), Positives = 35/68 (50%)
Frame = -1
Query: 338 RPRQVLEAVARRIPVGRGGRLGVQGPHPAAARPRGCRRLPHRVGHARRDGGRHVAAGHRP 159
R + VL+ V + VGRG +G+ GP+ A + +G ARRDGGR + G P
Sbjct: 5 RGQPVLDRVD--LEVGRGEAVGLVGPNGAGKTTL----IKVSLGLARRDGGRVLLNGLDP 58
Query: 158 GRHLRHRQ 135
R R R+
Sbjct: 59 WREPRARE 66
>DR2417 DR2417 COG0595 [R] Predicted hydrolase of the
metallo-beta-lactamase superfamil
Length = 559
Score = 32.3 bits (72), Expect = 1.2
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Frame = -1
Query: 350 HADARPRQVLEAVARRIPV------GRGGRLGVQGPHPAAARPRGCRRLPHRV-GHARRD 192
H P QV A+ARR P R HP R + P RV G R
Sbjct: 390 HPQPDPAQVFPALARRAPAPDQPRQARADAAPASQAHPDRQERRHRQPRPRRVPGVGHRG 449
Query: 191 GGRHVAAGHRPGRHLRHRQ 135
GGR + RPGR R R+
Sbjct: 450 GGRGLRG--RPGRGRRERR 466
>NMB1214 NMB1214 COG3210 [M] Putative hemagglutinin/hemolysin
Length = 2273
Score = 31.2 bits (69), Expect = 2.8
Identities = 25/84 (29%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 180 VTSAVA-PCMSYAMGQASAPSGACCSGVRTLNAKASTPADRNAACNCLKNLAGSGISMGN 356
VT A++ P ++ MG A V+T+ ++ + AA N L SG+++ N
Sbjct: 1386 VTVAISVPVVNTVMGAVDA-----VKAVQTVGKSKNSRVNAMAAANALNKGVDSGVALYN 1440
Query: 357 AANIPGKC---GVSVSFPINTKTN 419
AA P K G+SVS + N
Sbjct: 1441 AARNPKKAAGQGISVSVTYGEQKN 1464
>RV2848C Rv2848c COG1797 [H] Cobyrinic acid a,c-diamide synthase
Length = 457
Score = 30.4 bits (67), Expect = 4.7
Identities = 20/59 (33%), Positives = 25/59 (41%)
Frame = -1
Query: 323 LEAVARRIPVGRGGRLGVQGPHPAAARPRGCRRLPHRVGHARRDGGRHVAAGHRPGRHL 147
+ AVA P G+ + A R G P +VG D G H A RPGR+L
Sbjct: 3 VSAVAVAAPASGSGKTTIATGLIGALRQAGHTVAPFKVGPDFIDPGYHALAAGRPGRNL 61
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36159187
Number of Sequences: 78847
Number of extensions: 661086
Number of successful extensions: 1659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of query: 320
length of database: 26,228,252
effective HSP length: 49
effective length of query: 271
effective length of database: 22,364,749
effective search space: 6060846979
effective search space used: 6060846979
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)