BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_E02_I03ZS5.seq
(889 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CDA244 CDa244 COG3474 [C] Cytochrome c2 152 6e-37
YJR048W YJR048w COG3474 [C] Cytochrome c2 143 5e-34
YEL039C YEL039c COG3474 [C] Cytochrome c2 139 5e-33
CC1210 CC1210 COG3474 [C] Cytochrome c2 93 7e-19
MLL1048 mll1048 COG3474 [C] Cytochrome c2 87 5e-17
RP253 RP253 COG3474 [C] Cytochrome c2 80 4e-15
MLL5495 mll5495 COG3474 [C] Cytochrome c2 78 2e-14
CC1632 CC1632 COG3474 [C] Cytochrome c2 74 3e-13
CC2935 CC2935 COG3474 [C] Cytochrome c2 74 4e-13
MLR4905 mlr4905 COG3474 [C] Cytochrome c2 70 5e-12
MLR2752 mlr2752 COG3474 [C] Cytochrome c2 68 2e-11
SLL1245 sll1245 COG2010 [C] Cytochrome c, mono- and diheme vari... 33 0.66
HP1538 HP1538 COG2857 [C] Cytochrome c1 32 1.9
PM0027 PM0027 COG1138 [O] Cytochrome c biogenesis factor 31 3.3
AQ_042 aq_042 COG2857 [C] Cytochrome c1 31 3.3
SLL1359_2 sll1359_2 COG3258 [C] Cytochrome c 31 3.3
SHIA shiA COG0477 [G] 77 Permeases of the major facilitator sup... 30 4.3
ZSHIA ZshiA COG0477 [G] 77 Permeases of the major facilitator s... 30 4.3
PM1825 PM1825 COG1262 [S] Uncharacterized BCR 30 4.3
MJ0694 MJ0694 COG1498 [J] Protein implicated in ribosomal bioge... 30 5.6
YJL026W YJL026w COG0208 [F] Ribonucleotide reductase beta subunit 30 7.3
CDA3716 CDa3716 COG1132 [Q] ABC-type multidrug/protein/lipid tr... 30 7.3
JHP1461 jhp1461 COG2857 [C] Cytochrome c1 30 7.3
TA1282M Ta1282m COG1709 [K] Predicted transcriptional regulators 29 9.5
>CDA244 CDa244 COG3474 [C] Cytochrome c2
Length = 110
Score = 152 bits (385), Expect = 6e-37
Identities = 69/103 (66%), Positives = 80/103 (76%)
Frame = +1
Query: 103 GNPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWE 282
G+ GA +FKT+C QCHTV+ G HK GPNLHG+FGR+SG GYSY+ ANK K VEW
Sbjct: 8 GSEKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKKKGVEWT 67
Query: 283 ENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKATS 411
E T+ +YL NPKKYIPGTKM F GLKKP+DR DL+ YLKKATS
Sbjct: 68 EQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLVTYLKKATS 110
>YJR048W YJR048w COG3474 [C] Cytochrome c2
Length = 109
Score = 143 bits (360), Expect = 5e-34
Identities = 66/101 (65%), Positives = 75/101 (73%)
Frame = +1
Query: 103 GNPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWE 282
G+ GA +FKT+C QCHTV+ G HK GPNLHG+FGR SG GYSY+ AN K V W+
Sbjct: 7 GSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWD 66
Query: 283 ENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKA 405
EN + EYL NPKKYIPGTKM F GLKK +DR DLI YLKKA
Sbjct: 67 ENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 107
>YEL039C YEL039c COG3474 [C] Cytochrome c2
Length = 113
Score = 139 bits (351), Expect = 5e-33
Identities = 62/101 (61%), Positives = 77/101 (75%)
Frame = +1
Query: 103 GNPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWE 282
G+ GA +FKT+C QCHT++ G +K GPNLHG+FGR SG GYSY+ AN NK V+W+
Sbjct: 11 GSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWD 70
Query: 283 ENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKA 405
E+++ EYL NPKKYIPGTKM F GLKK +DR DLI Y+ KA
Sbjct: 71 EDSMSEYLTNPKKYIPGTKMAFAGLKKEKDRNDLITYMTKA 111
>CC1210 CC1210 COG3474 [C] Cytochrome c2
Length = 155
Score = 92.8 bits (229), Expect = 7e-19
Identities = 42/89 (47%), Positives = 57/89 (63%)
Frame = +1
Query: 142 CAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTLCEYLLNPKK 321
C CHT+ G GPNL+G+FGR++G GYS+S A K W+ L ++L +P+
Sbjct: 60 CRSCHTITEGGPDLTGPNLYGVFGRKAGVKEGYSFSDAVKAAGFIWDAQQLDKWLADPRG 119
Query: 322 YIPGTKMVFPGLKKPQDRADLIAYLKKAT 408
++PGTKM F G+K +DR DLIAYLK T
Sbjct: 120 FMPGTKMTFAGIKNEKDRIDLIAYLKVET 148
>MLL1048 mll1048 COG3474 [C] Cytochrome c2
Length = 134
Score = 86.7 bits (213), Expect = 5e-17
Identities = 49/99 (49%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Frame = +1
Query: 115 AGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYS----AANKNKAVEWE 282
AG K+F TKC CH + +K GP+LHG+ GR +GT + YS AA K+ V+W+
Sbjct: 35 AGEKVF-TKCQVCHIANEDK-NKIGPSLHGVIGRTAGTHPDFKYSDAMIAAGKS-GVKWD 91
Query: 283 ENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 399
E TL YL +PK + GTKM FPGLK D A++IAYLK
Sbjct: 92 EPTLTTYLHDPKAMVKGTKMTFPGLKNDADVANVIAYLK 130
>RP253 RP253 COG3474 [C] Cytochrome c2
Length = 175
Score = 80.5 bits (197), Expect = 4e-15
Identities = 40/98 (40%), Positives = 54/98 (54%)
Frame = +1
Query: 106 NPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEE 285
N + G +I K KC CH++D +K GP+L + GR + Y YS A W++
Sbjct: 73 NANHGREIAK-KCLMCHSLDKDGPNKLGPHLWNIVGRPKASITDYKYSFAISKLGGVWDD 131
Query: 286 NTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 399
L +L P Y PGTKM F G+ KPQD AD+I +LK
Sbjct: 132 ENLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169
>MLL5495 mll5495 COG3474 [C] Cytochrome c2
Length = 215
Score = 78.2 bits (191), Expect = 2e-14
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Frame = +1
Query: 106 NPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAA----NKNKAV 273
N +AGA +FK KC CH+ + G +K GP+L L R G++YSA +K
Sbjct: 71 NVEAGAAVFK-KCQACHSGEKGGPNKVGPDLWDLVDRPVAEHEGFAYSAGMKEFSKGGTE 129
Query: 274 EWEENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKATSS*K 420
+W + + ++ +PKK++ GT M F GL K +DRA++IAYL+ + + K
Sbjct: 130 KWTYDNINHFITSPKKFVKGTAMGFAGLPKDEDRANVIAYLRTLSDNPK 178
>CC1632 CC1632 COG3474 [C] Cytochrome c2
Length = 110
Score = 73.9 bits (180), Expect = 3e-13
Identities = 37/94 (39%), Positives = 55/94 (58%)
Frame = +1
Query: 115 AGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTL 294
+G ++F+ +C CH++ G K GP L G+ GR++ + GY+YSAA K + W + L
Sbjct: 14 SGQQLFEQRCGMCHSLQQAPG-KMGPPLAGVVGRKAASFPGYTYSAALKGSGITWTADKL 72
Query: 295 CEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 396
Y P K +PGTKM+ G +RA +IAYL
Sbjct: 73 DAYSKAPTKVVPGTKMLL-GAPNDAERAAVIAYL 105
>CC2935 CC2935 COG3474 [C] Cytochrome c2
Length = 228
Score = 73.6 bits (179), Expect = 4e-13
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Frame = +1
Query: 115 AGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVE---WEE 285
A + KCA CH DA + GP L + GR+ A ++YS K A + W+
Sbjct: 72 AAGQAVAAKCAACHKFDASNANGTGPGLWDVVGRKPAAHADFNYSTGMKEFAAKTPVWDY 131
Query: 286 NTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 396
+ L E+L P KY+ GT M F GLKK +DR +IAY+
Sbjct: 132 DHLYEFLKAPGKYVSGTNMTFVGLKKQEDRIAMIAYM 168
>MLR4905 mlr4905 COG3474 [C] Cytochrome c2
Length = 116
Score = 70.1 bits (170), Expect = 5e-12
Identities = 37/103 (35%), Positives = 58/103 (55%)
Frame = +1
Query: 103 GNPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWE 282
G+ +G F+ +C CH++ + GP L ++GR+ G+ AG+ YS A + K W
Sbjct: 14 GDAISGRGYFEDRCTGCHSI---VRNGFGPRLGDVYGRRVGSVAGFQYSQALRQKRFVWS 70
Query: 283 ENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKATS 411
E +L +L P +++PGT+M + Q RAD+IAYLK S
Sbjct: 71 EKSLDSWLSGPGQFLPGTRMGI-SIADQQIRADIIAYLKSHPS 112
>MLR2752 mlr2752 COG3474 [C] Cytochrome c2
Length = 129
Score = 67.8 bits (164), Expect = 2e-11
Identities = 42/103 (40%), Positives = 54/103 (51%), Gaps = 5/103 (4%)
Frame = +1
Query: 106 NPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGY--SYSAANKNKAVE- 276
+P G +F +C CH A K GP+L G+ GR +GT + YS A K+
Sbjct: 24 DPVQGKHVFN-RCVACHEA-ATDRDKVGPHLKGVVGRTAGTAESFLGHYSEAMKSAGAAG 81
Query: 277 --WEENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 399
W+E L EYL PK +PG KM F GL D A++IAYLK
Sbjct: 82 LVWDEANLTEYLRAPKLKVPGNKMAFGGLTNDDDIANVIAYLK 124
>SLL1245 sll1245 COG2010 [C] Cytochrome c, mono- and diheme
variants
Length = 128
Score = 33.1 bits (74), Expect = 0.66
Identities = 26/99 (26%), Positives = 39/99 (39%)
Frame = +1
Query: 103 GNPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWE 282
G+ D G IF+ CA CH + A GP+L G+ R+S + + + ++E
Sbjct: 55 GDADRGRAIFQANCAVCHGIQADG--YIGPSLWGVSQRRSQSHIIHQVVSGQTPPMPQFE 112
Query: 283 ENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 399
N PQ+ ADL+ YLK
Sbjct: 113 PN-------------------------PQEMADLLNYLK 126
>HP1538 HP1538 COG2857 [C] Cytochrome c1
Length = 285
Score = 31.6 bits (70), Expect = 1.9
Identities = 27/94 (28%), Positives = 43/94 (45%)
Frame = +1
Query: 124 KIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTLCEY 303
++F C +CH++D A K + L S K E+ L +
Sbjct: 162 EVFAQSCQRCHSLDY-AKDKAFSDPKDLANYLGSHAPDLSMMIRAKG------EHGLNIF 214
Query: 304 LLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKA 405
+ +P+K +PGT M GL + Q + +IAYL+KA
Sbjct: 215 INDPQKLLPGTAMPRVGLSE-QAQKQVIAYLEKA 247
>PM0027 PM0027 COG1138 [O] Cytochrome c biogenesis factor
Length = 641
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 527 TIILRISFH-DMGFISLRLDWNLLRPLDSSSGI-LGFWWCEFDGGWGTFYYF 676
TI +S H D + W LL L + GI LG WW ++ GWG ++++
Sbjct: 190 TISALVSGHLDAAVARMMRPWVLLSWLFLTLGIVLGSWWAYYELGWGGWWFW 241
>AQ_042 aq_042 COG2857 [C] Cytochrome c1
Length = 240
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Frame = +1
Query: 283 ENTLCEYLLNPKKYIPGTKMVFPGLKKPQ-------DRADLIAYLKKATS 411
E L +++LNP+K +PGT M P L PQ A ++AY+K +
Sbjct: 152 EGYLYQFILNPQKVLPGTTM--PQLFNPQFDPQAKEKVAKIVAYMKSVNT 199
>SLL1359_2 sll1359_2 COG3258 [C] Cytochrome c
Length = 238
Score = 30.8 bits (68), Expect = 3.3
Identities = 30/104 (28%), Positives = 39/104 (36%), Gaps = 6/104 (5%)
Frame = +1
Query: 103 GNPDAGAKIFKTKCAQCHTV----DAGAGHKQGPNLHG--LFGRQSGTTAGYSYSAANKN 264
GNP+ G IF+ KCA CH G+ P L G F RQ+G
Sbjct: 143 GNPNQGQAIFEQKCAFCHGALGQGRYGSDTYYRPALWGPNSFNRQAGMA----------- 191
Query: 265 KAVEWEENTLCEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 396
NTL E++ Y F G+ Q+ DL Y+
Sbjct: 192 -----RINTLAEFIHGNMPY------QFDGVLTDQEAWDLATYI 224
>SHIA shiA COG0477 [G] 77 Permeases of the major facilitator
superfamily
Length = 438
Score = 30.4 bits (67), Expect = 4.3
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = +2
Query: 659 GTFYYFPFFANSETP*SFWVVFFS-------HSLLCFVIKDMF 766
GT FPFF E FW+VFFS H ++ V + MF
Sbjct: 326 GTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMF 368
>ZSHIA ZshiA COG0477 [G] 77 Permeases of the major facilitator
superfamily
Length = 438
Score = 30.4 bits (67), Expect = 4.3
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = +2
Query: 659 GTFYYFPFFANSETP*SFWVVFFS-------HSLLCFVIKDMF 766
GT FPFF E FW+VFFS H ++ V + MF
Sbjct: 326 GTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMF 368
>PM1825 PM1825 COG1262 [S] Uncharacterized BCR
Length = 511
Score = 30.4 bits (67), Expect = 4.3
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = -2
Query: 465 KMNSLAMTRSQHHHALSRGGGFLQVRNEISTVLWLLQPREDHLGSR 328
KMN L+ Q + RGG +L+ +++ VL L P D G++
Sbjct: 244 KMNKLSRYHGQEGGVIVRGGSYLKSEADVNNVLRLEMPFYDQQGAK 289
>MJ0694 MJ0694 COG1498 [J] Protein implicated in ribosomal
biogenesis, Nop56p homolog
Length = 414
Score = 30.0 bits (66), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 660 PQPPSNSHHQKPSIPEDESKGRRRFQSKRSDMK 562
P+PP +KP + E KG++ K+ D K
Sbjct: 363 PKPPKKKKKEKPKAKKKEKKGKKEKSKKKKDKK 395
>YJL026W YJL026w COG0208 [F] Ribonucleotide reductase beta subunit
Length = 399
Score = 29.6 bits (65), Expect = 7.3
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = -3
Query: 749 QNTVNYEKKTLPKNFKEFLNLQKRESNRMSPNH------HRIHTTRNRVYQKMNPKVEED 588
++ +N E +TL + + ++ K + ++ + NH H++H + + +K P + ED
Sbjct: 23 KSNLNKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNED 82
Query: 587 SNLNVVI*NPYHE 549
V+ YHE
Sbjct: 83 KERTVLFPIKYHE 95
>CDA3716 CDa3716 COG1132 [Q] ABC-type multidrug/protein/lipid
transport system, ATPase c
Length = 1580
Score = 29.6 bits (65), Expect = 7.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -1
Query: 463 NEFT----RHDKITASSCPFKRRWLSSGTQ*DQHGPVASSAQG-RPSWFQG 326
NEFT H+ T+S +WLS TQ D GP++S+ P + QG
Sbjct: 35 NEFTTITNNHNNNTSSQYQGLNKWLSCNTQEDGWGPLSSTYNDLTPCFLQG 85
>JHP1461 jhp1461 COG2857 [C] Cytochrome c1
Length = 285
Score = 29.6 bits (65), Expect = 7.3
Identities = 25/94 (26%), Positives = 42/94 (44%)
Frame = +1
Query: 124 KIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTLCEY 303
++F C +CH++D A K + L S K E+ L +
Sbjct: 162 EVFAQSCQRCHSLDY-AKDKAFSDPKDLANYLGSHAPDLSMMIRAKG------EHGLNVF 214
Query: 304 LLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKA 405
+ +P+K +PGT M GL + + +I+YL+KA
Sbjct: 215 INDPQKLLPGTAMPRVGLNEKAQK-QVISYLEKA 247
>TA1282M Ta1282m COG1709 [K] Predicted transcriptional regulators
Length = 226
Score = 29.3 bits (64), Expect = 9.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 648 SNSHHQKPSIPEDESKGRRRFQSKRSDMKPIS*NEIRKIIVSWIT 514
SN HQ PS+ D GRR+F S S +RKI+ + IT
Sbjct: 38 SNFLHQSPSVISDYETGRRKFPSIAS---------VRKIVDALIT 73
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37968245
Number of Sequences: 78847
Number of extensions: 722229
Number of successful extensions: 1868
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of query: 296
length of database: 26,228,252
effective HSP length: 49
effective length of query: 246
effective length of database: 22,364,749
effective search space: 5501728254
effective search space used: 5501728254
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)