BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_E03_I05ZS5.seq
         (909 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SLR1509 slr1509  COG0168 [P] Trk-type K+ transport systems, memb...    30  7.5
SLR0698 slr0698  COG2954 [S] Uncharacterized BCR                       29  9.8

>SLR1509 slr1509  COG0168 [P] Trk-type K+ transport systems,
           membrane components
          Length = 444

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 459 ITGLSTLEINEAFSIS*HVSSMILAVLLGDTYTGRACFLM 578
           +TGLS +++N+ FS    ++ M+LA L G  Y     FLM
Sbjct: 49  VTGLSVVDVNKYFSFWGELTVMLLAQLGGLGYMTLTTFLM 88



>SLR0698 slr0698  COG2954 [S] Uncharacterized BCR
          Length = 154

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 398 HKVPAIDTPGILTELCGDPALDR 330
           +++PA+D   ILTELC  P +++
Sbjct: 65  YEIPAVDANQILTELCSPPLIEK 87



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29081641
Number of Sequences: 78847
Number of extensions: 467467
Number of successful extensions: 1362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of query: 303
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)