BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_E04_I07ZS5.seq
         (909 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BS_GLTX BS_gltX  COG0008 [J] Glutamyl- and glutaminyl-tRNA synth...    30  5.7
BS_YQXC BS_yqxC  COG1189 [J] Predicted rRNA methylases                 30  5.7
MLR3498 mlr3498  COG1130 [G] ABC-type sugar/spermidine/putrescin...    30  7.5

>BS_GLTX BS_gltX  COG0008 [J] Glutamyl- and glutaminyl-tRNA
           synthetases
          Length = 483

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +3

Query: 711 SGHLYAGPYSXALHCSFNYGF---K*SKFCL--DSSKKKKNFKGGPGSHLS-LIWSGFTI 872
           +GHL+ G    AL   FNY F   +  KF +  + + KK+N +GG  S L+ L W G   
Sbjct: 14  TGHLHIGNARTAL---FNYLFARNQGGKFIIRVEDTDKKRNIEGGEQSQLNYLKWLGIDW 70

Query: 873 QRXVILTPVYG 905
              V +   YG
Sbjct: 71  DESVDVGGEYG 81



>BS_YQXC BS_yqxC  COG1189 [J] Predicted rRNA methylases
          Length = 269

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 222 ENQKEVIVDQTGEREATYEDFTKTLPENDCRFAVFDFDF 338
           ++++ V++++T  R AT  DFTK +PE    FA  D  F
Sbjct: 124 QDERVVVMERTNFRYATPADFTKGMPE----FATIDVSF 158



>MLR3498 mlr3498  COG1130 [G] ABC-type
           sugar/spermidine/putrescine/iron/thiamine transpor
          Length = 360

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
 Frame = -2

Query: 500 FARVSGLHLNLDAVQG----PLELLVGARVRHLAPHLCG----VRRPEDIEDPALWHILR 345
           F  + GLH +   V       L++  G+R   + P  CG    +R     E P    I+ 
Sbjct: 3   FLEIKGLHKHYGPVAALAGVDLDVASGSRTAIVGPSGCGKTTLLRLIAGFEAPDQGRIVL 62

Query: 344 GGEVEVKHCESAVVLRQGLGEVLIGGLALPSLVHND 237
            GEV      +    R+G+G V   G   P L   D
Sbjct: 63  DGEVLANGGAAVPAHRRGIGVVAQDGALFPHLTIGD 98



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39429767
Number of Sequences: 78847
Number of extensions: 789986
Number of successful extensions: 2071
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2071
length of query: 303
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)