BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_E05_I09ZS5.seq
         (908 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YER165W YER165w  COG0724 [K] RNA-binding proteins (RRM domain)         30  4.4
VNG1690G VNG1690G  COG0088 [J] Ribosomal protein L4                    30  5.7
BS_SACC BS_sacC  COG1621 [G] Beta-fructosidases (levanase/invert...    30  5.7
ZHYCD ZhycD  COG0650 [C] Formate hydrogenlyase subunit 4               29  9.8
DR1624 DR1624  COG0513 [L] 3 Superfamily II DNA and RNA helicases      29  9.8

>YER165W YER165w  COG0724 [K] RNA-binding proteins (RRM domain)
          Length = 577

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 199 LPRSFFPGSYPPMMHPSAVMPMQGWNPY-MPPINQVASAGGQQTVQAGPLYGLSHQG 366
           +P  F P  +  +M P  V P  G NP  M P+  +   G     + GP+YG+  QG
Sbjct: 433 MPGQFMPPMFYGVMPPRGV-PFNGPNPQQMNPMGGMPKNGMPPQFRNGPVYGVPPQG 488



>VNG1690G VNG1690G  COG0088 [J] Ribosomal protein L4
          Length = 250

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 763 AQGSLRGYGAIGHVPKRRCEGIELKSTQWGIKLHPGTKFAKTHAVSSKD 617
           +QGS RG   + HVPK   +G  +  T  G K HP  K  K H +   D
Sbjct: 60  SQGSGRG---MAHVPKANGQGARVPQTVGGRKAHP-PKAEKDHGLDVND 104



>BS_SACC BS_sacC  COG1621 [G] Beta-fructosidases
           (levanase/invertase)
          Length = 677

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/41 (36%), Positives = 21/41 (50%)
 Frame = +1

Query: 538 PQYLSTPRSNYMLSPLGLPIRPGAQPCLYYSQHGFWQIWSP 660
           PQY  TP +N+M  P G+    G +  L+Y  H +   W P
Sbjct: 36  PQYHFTPEANWMNDPNGMVYYAG-EYHLFYQYHPYGLQWGP 75



>ZHYCD ZhycD  COG0650 [C] Formate hydrogenlyase subunit 4
          Length = 307

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
 Frame = +3

Query: 621 LLLTAWVLANLVPGCNL------IPHWVLLSSIPSHLRLGTCPMAPY 743
           LLL  WV A +    N+      + HW L  SIP  L L  C  A +
Sbjct: 141 LLLGLWVAAQVASSTNISNITDTVYHWPLSQSIPLVLALCACAFATF 187



>DR1624 DR1624  COG0513 [L] 3 Superfamily II DNA and RNA helicases
          Length = 560

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 233 GG*EPGKNDRGRTEGLPNCQLARGGYGRGEETGSCCTGGY 114
           GG + G+  R R EG       RGGYGRG  +G    GGY
Sbjct: 405 GGYQGGRGYRDRDEG------GRGGYGRGGNSGG-GRGGY 437



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45587064
Number of Sequences: 78847
Number of extensions: 1001654
Number of successful extensions: 2289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2288
length of query: 302
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)