BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_E07_I13ZS5.seq
(910 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BS_SACC BS_sacC COG1621 [G] Beta-fructosidases (levanase/invert... 86 2e-27
TM1414 TM1414 COG1621 [G] Beta-fructosidases (levanase/invertase) 92 3e-27
Z3625 Z3625 COG1621 [G] Beta-fructosidases (levanase/invertase) 70 2e-17
BH1858 BH1858 COG1621 [G] Beta-fructosidases (levanase/invertase) 65 7e-16
BS_SACA BS_sacA COG1621 [G] Beta-fructosidases (levanase/invert... 50 2e-12
BS_YVEB BS_yveB COG1621 [G] Beta-fructosidases (levanase/invert... 46 5e-12
YIL162W YIL162w COG1621 [G] Beta-fructosidases (levanase/invert... 45 7e-09
SPY1816 SPy1816 COG1621 [G] Beta-fructosidases (levanase/invert... 40 3e-08
VCA0655 VCA0655 COG1621 [G] Beta-fructosidases (levanase/invert... 43 7e-04
PM1848 PM1848 COG1621 [G] Beta-fructosidases (levanase/invertase) 37 0.047
L0023 L0023 COG2211 [G] Na+/melibiose symporter and related tra... 32 2.0
MPN475 MPN475 COG1160 [R] Predicted GTPases 31 2.6
MLL3627 mll3627 COG0508 [C] Dihydrolipoamide acyltransferases 30 5.7
Z4080 Z4080 COG2025 [C] Electron transfer flavoprotein alpha-su... 30 5.7
PA1607 PA1607 COG1733 [K] Predicted transcriptional regulators 29 9.8
APE2371 APE2371 COG2125 [J] Ribosomal protein S6E (S10) 29 9.8
VC0130_2 VC0130_2 COG2199 [T] Diguanylate cyclase/phosphodieste... 29 9.8
>BS_SACC BS_sacC COG1621 [G] Beta-fructosidases
(levanase/invertase)
Length = 677
Score = 86.3 bits (212), Expect(2) = 2e-27
Identities = 58/177 (32%), Positives = 85/177 (47%), Gaps = 12/177 (6%)
Frame = +1
Query: 142 GVVWNKIAWGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATMLPNGT---------- 291
G+ W + WGHAVS DLV W HLPVA+ PD + + +GSA + N T
Sbjct: 70 GLQWGPMHWGHAVSKDLVTWEHLPVALYPD---EKGTIFSGSAVVDKNNTSGFQTGKEKP 126
Query: 292 VILLYTGNSDTFAQVQCLAFPADPEDPLLRIWTKHPANPVIFPPPGIGDRDFRDPMAAWF 471
++ +YT + + QVQ +A+ D R WTK+ NPVI P G +DFRDP W+
Sbjct: 127 LVAIYTQDREGH-QVQSIAYSNDKG----RTWTKYAGNPVI---PNPGKKDFRDPKVFWY 178
Query: 472 DKSDNTWRTIIWSNDDHGHARIALLVKTKDFIKY--HLIXXXXXXXXXXXLWECLDL 636
+K + W ++ + D +L+ T +K + +WEC DL
Sbjct: 179 EK-EKKWVMVLAAGD-------RILIYTSKNLKQWTYASEFGQDQGSHGGVWECPDL 227
Score = 55.8 bits (133), Expect(2) = 2e-27
Identities = 23/46 (50%), Positives = 28/46 (60%)
Frame = +2
Query: 2 DRLSSMRWVRGQRTGYHFQPDGNFMNDPNAPMYYRGLYHFFYQYNP 139
D S + R YHF P+ N+MNDPN +YY G YH FYQY+P
Sbjct: 23 DAADSSYYDEDYRPQYHFTPEANWMNDPNGMVYYAGEYHLFYQYHP 68
>TM1414 TM1414 COG1621 [G] Beta-fructosidases (levanase/invertase)
Length = 432
Score = 92.4 bits (228), Expect(2) = 3e-27
Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Frame = +1
Query: 151 WNKIAWGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATMLPNGTVILLYTGNSDTF- 327
W I WGHAVS DLVHWRHLPVA+ PD + +GV +GSA + +G + L+YT D
Sbjct: 41 WGNICWGHAVSDDLVHWRHLPVALYPDD--ETHGVFSGSA-VEKDGKMFLVYTYYRDPTH 97
Query: 328 ----AQVQCLAFPADPEDPLLRIWTKHPANPVIFPPPGIGDRDFRDPMAAWFDKSDNTWR 495
+ QC+A + D + K+ NPVI PP G FRDP ++S+ WR
Sbjct: 98 NKGEKETQCVAMSENGLD-----FVKYDGNPVISKPPEEGTHAFRDPKV---NRSNGEWR 149
Query: 496 TIIWSNDDHGHARIALLVKTKDFIKYHLIXXXXXXXXXXXLWECLDLLR 642
++ S D R+ L+ T D + + EC DL+R
Sbjct: 150 MVLGSGKDEKIGRV--LLYTSDDLFHWKYEGVIFEDETTKEIECPDLVR 196
Score = 49.3 bits (116), Expect(2) = 3e-27
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 38 RTGYHFQPDGNFMNDPNAPMYYRGLYHFFYQYNPK 142
+ YHF P +MNDPN ++++G YH FYQYNP+
Sbjct: 3 KPNYHFFPITGWMNDPNGLIFWKGKYHMFYQYNPR 37
>Z3625 Z3625 COG1621 [G] Beta-fructosidases (levanase/invertase)
Length = 477
Score = 69.7 bits (169), Expect(2) = 2e-17
Identities = 46/139 (33%), Positives = 64/139 (45%), Gaps = 8/139 (5%)
Frame = +1
Query: 151 WNKIAWGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATMLPNGTVILLYT------- 309
W + WGHA S D++HW+H P+A+ P D +G + SA + NG + L+YT
Sbjct: 63 WGPMHWGHATSDDMIHWQHEPIALAPGDENDKDGCFSXSA-VDDNGVLSLIYTGHVWLDG 121
Query: 310 -GNSDTFAQVQCLAFPADPEDPLLRIWTKHPANPVIFPPPGIGDRDFRDPMAAWFDKSDN 486
GN D +VQCLA D VI PP G FRDP W + +
Sbjct: 122 AGNDDAIREVQCLATSRD--------GIHFEKQGVILTPPE-GIMHFRDP-KVW--READ 169
Query: 487 TWRTIIWSNDDHGHARIAL 543
TW ++ + D +I L
Sbjct: 170 TWWMVVGAKDPGNTGQILL 188
Score = 38.5 bits (88), Expect(2) = 2e-17
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = +2
Query: 47 YHFQPDGNFMNDPNAPMYYRGLYHFFYQYNP 139
+H P +MNDPN +++ YH FYQ++P
Sbjct: 28 FHLAPPAGWMNDPNGLIWFNDRYHAFYQHHP 58
>BH1858 BH1858 COG1621 [G] Beta-fructosidases (levanase/invertase)
Length = 487
Score = 64.7 bits (156), Expect(2) = 7e-16
Identities = 56/168 (33%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Frame = +1
Query: 166 WGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATMLPNGTVILLYTGN----SDTFAQ 333
WGH VS DLV W A+ P W+D NG +GSA + NG + L YTGN +D
Sbjct: 72 WGHFVSGDLVFWEEKEPALTPSDWFDKNGCYSGSA-VADNGKLKLFYTGNVKNENDERES 130
Query: 334 VQCLAFPADPEDPLLRIWTKHPANPVIFPPPGIGDRDFRDPMAAWFDKSDNTWRTIIWSN 513
QC+ A+ ED L +TK VI P FRDP W K D W +I +
Sbjct: 131 YQCV---AESEDGL--TFTK---KGVILHVPDGYTAHFRDP-KVW--KRDGIWYLVIGAQ 179
Query: 514 DDH--GHARIALLVKTKDFIKYHLIXXXXXXXXXX-----XLWECLDL 636
GH LL ++ D ++ +WEC DL
Sbjct: 180 TKQIDGH---VLLFRSDDLKEWQFAGIVTGSNVRSMGDFGYMWECPDL 224
Score = 38.5 bits (88), Expect(2) = 7e-16
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 38 RTGYHFQPDGNFMNDPNAPMYYRGLYHFFYQYNP 139
R YH P +NDPN + + G YH FYQ++P
Sbjct: 29 RLVYHLMPPVGLLNDPNGFIDWDGTYHLFYQWHP 62
>BS_SACA BS_sacA COG1621 [G] Beta-fructosidases
(levanase/invertase)
Length = 480
Score = 50.4 bits (119), Expect(2) = 2e-12
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = +1
Query: 166 WGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATMLPNGTVILLYTGN----SDTFAQ 333
WGH + D+V+W+ +A+ P W+D NG +GSA + + + L YTGN
Sbjct: 72 WGHYTTQDVVNWKREEIALAPSDWFDKNGCYSGSA-VTKDDRLYLFYTGNVRDQDGNRET 130
Query: 334 VQCLAFPAD 360
QCLA D
Sbjct: 131 YQCLAVSDD 139
Score = 40.8 bits (94), Expect(2) = 2e-12
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 38 RTGYHFQPDGNFMNDPNAPMYYRGLYHFFYQYNP 139
R +H P +NDPN +Y++G YH F+Q+ P
Sbjct: 29 RQHFHIMPPVGLLNDPNGVIYWKGSYHVFFQWQP 62
>BS_YVEB BS_yveB COG1621 [G] Beta-fructosidases
(levanase/invertase)
Length = 516
Score = 46.2 bits (108), Expect(2) = 5e-12
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Frame = +1
Query: 154 NKIAWGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGS--------ATMLPNGTVILLYT 309
N W HAVS DLVHW VA +P + TGS A N V ++
Sbjct: 83 NGTEWRHAVSEDLVHWTDEGVA-IPKYTNPDGDIWTGSVVVDKENTAGFGKNALVAIVTQ 141
Query: 310 GNSDTFAQVQCLAFPADPEDPLLRIWTKHPANPVIFPPPGIGDRDFRDPMAAWFDKSDNT 489
++ Q Q L + D + + + NPV+ P G DFRDP W D DN
Sbjct: 142 PSAKDKKQEQYLWYSTDKG----KSFKFYSGNPVM---PNPGTDDFRDPKVIW-DDQDNK 193
Query: 490 W 492
W
Sbjct: 194 W 194
Score = 43.9 bits (102), Expect(2) = 5e-12
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 38 RTGYHFQPDGNFMNDPNAPMYYRGLYHFFYQYN 136
R YHF + NDP P+Y+ G YH+FY YN
Sbjct: 44 RAAYHFTTPDKWKNDPQKPIYFDGKYHYFYLYN 76
>YIL162W YIL162w COG1621 [G] Beta-fructosidases
(levanase/invertase)
Length = 660
Score = 45.1 bits (105), Expect(2) = 7e-09
Identities = 35/137 (25%), Positives = 59/137 (42%), Gaps = 14/137 (10%)
Frame = +1
Query: 148 VWNK-IAWGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSA-------------TMLPN 285
VW + WGHA S DL +W P+A+ P + + +G +GS T+ P
Sbjct: 195 VWGTPLFWGHATSDDLTNWEDQPIAIAPKR--NDSGAFSGSMVVDYNNTSGFFNDTIDPR 252
Query: 286 GTVILLYTGNSDTFAQVQCLAFPADPEDPLLRIWTKHPANPVIFPPPGIGDRDFRDPMAA 465
+ ++T N+ ++ Q +++ D +T++ NPV+ FRDP
Sbjct: 253 QRCVAIWTYNTPE-SEEQYISYSLDGG----YTFTEYQKNPVL----AANSTQFRDPKVF 303
Query: 466 WFDKSDNTWRTIIWSND 516
W++ S T S D
Sbjct: 304 WYEPSQKWIMTAAKSQD 320
Score = 34.3 bits (77), Expect(2) = 7e-09
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 2/45 (4%)
Frame = +2
Query: 11 SSMRWVRGQRTGYHFQPDGNFMNDPNAPMYYR--GLYHFFYQYNP 139
+SM R HF P+ +MNDPN Y +H ++QYNP
Sbjct: 147 ASMTNETSDRPLVHFTPNKGWMNDPNGLWYDEKDAKWHLYFQYNP 191
>SPY1816 SPy1816 COG1621 [G] Beta-fructosidases
(levanase/invertase)
Length = 479
Score = 39.7 bits (91), Expect(2) = 3e-08
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 166 WGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATMLPNGTVILLYTGN 315
W H S+DLVH+ ++PD +D +G +GSA + + + L YTGN
Sbjct: 76 WVHMTSTDLVHFTETRSRLLPDHAHDSHGAYSGSAYAI-DDKLFLFYTGN 124
Score = 37.7 bits (86), Expect(2) = 3e-08
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +2
Query: 47 YHFQPDGNFMNDPNAPMYYRGLYHFFYQYNP 139
+H +P +NDPN Y+ G YH FYQ P
Sbjct: 36 FHVEPKTGLLNDPNGFSYFNGRYHLFYQNWP 66
>VCA0655 VCA0655 COG1621 [G] Beta-fructosidases
(levanase/invertase)
Length = 548
Score = 43.1 bits (100), Expect = 7e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 166 WGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATMLPNGTVILLYTGNS 318
W H S DLV W+ VA+ P W+D +GV +G A + + L YTGN+
Sbjct: 137 WVHLKSLDLVDWQWQSVALTPSDWFDSHGVFSGHA-VSHQQDLWLFYTGNT 186
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +2
Query: 47 YHFQPDGNFMNDPNAPMYYRGLYHFFYQYNP-----KASSGTRSPGATPCRRTWSTGAIS 211
+H P +NDPN +Y++G YH FYQ++P K W + A++
Sbjct: 97 WHISPPQGLLNDPNGFIYHQGEYHLFYQWHPFACEHKDKYWVHLKSLDLVDWQWQSVALT 156
Query: 212 PLPWCPTSGTTS 247
P W + G S
Sbjct: 157 PSDWFDSHGVFS 168
>PM1848 PM1848 COG1621 [G] Beta-fructosidases (levanase/invertase)
Length = 499
Score = 37.0 bits (84), Expect = 0.047
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 38 RTGYHFQPDGNFMNDPNAPMYYRGLYHFFYQYNPKAS 148
R YH P+ +NDPN ++ YH FYQ+ P A+
Sbjct: 53 RPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAA 89
>L0023 L0023 COG2211 [G] Na+/melibiose symporter and related
transporters
Length = 508
Score = 31.6 bits (70), Expect = 2.0
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Frame = +1
Query: 139 QGVVWNKIAWGHAVSSDLVHWRHLPVAMVPDQWYDINGVLTGSATML-PNGTVILLYT 309
Q +W +A A+S L+ W LP M PD Y L+GS + GT I+ +T
Sbjct: 119 QYYLWVYVAIEVAISMILIPWETLPTEMTPD--YKKRTTLSGSRMFISATGTAIVFFT 174
>MPN475 MPN475 COG1160 [R] Predicted GTPases
Length = 449
Score = 31.2 bits (69), Expect = 2.6
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -2
Query: 363 RVCREGKALNLGKGVTVARVKQDDRAIGQHGGGSRQDAVDVVPLVGHHGNGEMAPVDQVR 184
R C GK N+GK + ++ Q +R + G+ +DA+D +PL + N + +R
Sbjct: 181 RFCVIGKP-NVGKSSLINQLVQQNRVLVSDESGTTRDAID-IPLRVNGQNYLLIDTAGIR 238
Query: 183 RHG-VAPG 163
R G +APG
Sbjct: 239 RKGKIAPG 246
>MLL3627 mll3627 COG0508 [C] Dihydrolipoamide acyltransferases
Length = 454
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -2
Query: 372 GVFRVCREGKALNLGKGVTVARVKQDDRAIGQHGGGSRQDAVDVVPLVGHHG----NGEM 205
GV R + +++ G VA + DD A G ++QDA + PLVG G++
Sbjct: 54 GVLRDVSGKEGVDIPVGAPVAWIYADDEAYG-----AKQDAAPISPLVGEMSAKSTEGDV 108
Query: 204 APVDQVRRHGVAPGDLVP 151
P H V P +P
Sbjct: 109 VPPTS---HSVMPPSALP 123
>Z4080 Z4080 COG2025 [C] Electron transfer flavoprotein
alpha-subunit
Length = 189
Score = 30.0 bits (66), Expect = 5.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 367 DPLLRIWTKHPANPVIFPPPGIGD 438
D L+ W + PAN V+FPP GD
Sbjct: 46 DALVEQWQRTPANVVLFPPGTFGD 69
>PA1607 PA1607 COG1733 [K] Predicted transcriptional regulators
Length = 146
Score = 29.3 bits (64), Expect = 9.8
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = -2
Query: 477 LIKPRGHGIAEVPVANAGGREDDGVGRVLGPDTEEGVFRVCREGKALNLGKGVTVARVKQ 298
++K H A PVA DG ++ D EG+ R K+L L K + AR+
Sbjct: 1 MVKRTSHKQASCPVARPLDVIGDGWSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARL-- 58
Query: 297 DDRAIGQHG 271
R + +HG
Sbjct: 59 --RNLVEHG 65
>APE2371 APE2371 COG2125 [J] Ribosomal protein S6E (S10)
Length = 245
Score = 29.3 bits (64), Expect = 9.8
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = -1
Query: 682 GKYPLLRGERTRKNVKGQGTPTSRGREQ 599
G +P RGER RK+V+G+ P RG +
Sbjct: 200 GFHPRERGERRRKSVRGRMIPDPRGERR 227
>VC0130_2 VC0130_2 COG2199 [T] Diguanylate
cyclase/phosphodiesterase domain 1 (GGDEF)
Length = 276
Score = 29.3 bits (64), Expect = 9.8
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 130 LVEEVVQSAVIHRSIGIV--HEVAVRLEMVTSALPSYPAHRTEPI 2
L+ E Q V+H S+ + E AVR ++V LPSYP T P+
Sbjct: 5 LLYEHGQQQVMHHSMTFLALREGAVRDDLVPIPLPSYPEGMTSPL 49
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41660087
Number of Sequences: 78847
Number of extensions: 931518
Number of successful extensions: 2845
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2836
length of query: 303
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)