BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_E09_I17ZS5.seq
         (884 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TVN0871 TVN0871  COG0463 [M] Glycosyltransferases involved in ce...    29  9.5

>TVN0871 TVN0871  COG0463 [M] Glycosyltransferases involved in cell
           wall biogenesis
          Length = 170

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 213 FYHDASELRDKFEANRNVENLD 278
           +YH+ASE+ DKF  + N++N D
Sbjct: 52  YYHNASEIVDKFGHSLNIKNTD 73



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23685903
Number of Sequences: 78847
Number of extensions: 369430
Number of successful extensions: 941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of query: 294
length of database: 26,228,252
effective HSP length: 49
effective length of query: 245
effective length of database: 22,364,749
effective search space: 5479363505
effective search space used: 5479363505
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)