BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_E11_I21ZS5.seq
         (908 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PH0465 PH0465  COG2317 [E] Zn-dependent carboxypeptidases              30  5.7
PA3599 PA3599  COG2771 [K] DNA-binding HTH domains                     29  9.8

>PH0465 PH0465  COG2317 [E] Zn-dependent carboxypeptidases
          Length = 515

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = -3

Query: 330 DLAASVASQAVLPLRSWLRYCTTMYGSIFPRKSLPENTVNIQV 202
           D    VA     P++SWLR     +GSI+P K L +  +   V
Sbjct: 459 DFEEKVAKGEFEPIKSWLREKIHRWGSIYPPKELLKKAIGEDV 501



>PA3599 PA3599  COG2771 [K] DNA-binding HTH domains
          Length = 261

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 220 VLRQRFPWEDRPVHGRAVPEPGAQG 294
           ++RQR  +ED  ++  A PEPG QG
Sbjct: 165 LMRQRLAFEDEVLNSPAAPEPGWQG 189



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38610521
Number of Sequences: 78847
Number of extensions: 746057
Number of successful extensions: 1706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of query: 302
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)