BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_F01_K01ZS5.seq
         (916 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BH2596 BH2596  COG3679 [S] Uncharacterized ACR                         34  0.40
CDA6734 CDa6734  COG0466 [O] ATP-dependent Lon protease, bacteri...    30  5.8

>BH2596 BH2596  COG3679 [S] Uncharacterized ACR
          Length = 147

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
 Frame = +1

Query: 193 EMDEGVNTTSHIFFMGVAPS----KGGPSFEAAAENGGCKGGGECSCN 324
           E++  +N  S +    V+PS     G P F++    GGC  GG CSC+
Sbjct: 99  ELESLLNELSVMIARAVSPSIKVPTGNPFFDSIGCGGGCGSGGGCSCS 146



>CDA6734 CDa6734  COG0466 [O] ATP-dependent Lon protease, bacterial
           type
          Length = 1078

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -3

Query: 299 LHPPFSAAASKDGPPLEGAT 240
           LHPPF A A KD P L GAT
Sbjct: 180 LHPPFLAIAMKDRPFLPGAT 199



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33867397
Number of Sequences: 78847
Number of extensions: 595143
Number of successful extensions: 1252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of query: 305
length of database: 26,228,252
effective HSP length: 49
effective length of query: 255
effective length of database: 22,364,749
effective search space: 5703010995
effective search space used: 5703010995
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)