BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_F03_K05ZS5.seq
         (900 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CC0042 CC0042  COG0532 [J] Translation initiation factor 2 (GTPa...    32  1.9
PM0057 PM0057  COG3210 [M] Putative hemagglutinin/hemolysin            31  2.5

>CC0042 CC0042  COG0532 [J] Translation initiation factor 2 (GTPase)
          Length = 1037

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 47/180 (26%), Positives = 67/180 (37%), Gaps = 13/180 (7%)
 Frame = +3

Query: 144 LA*PASDSRRAEQPVS*RPPMPAKRPLEGGGGGDSPSPARSPALKKRCRSFDV--EIRGF 317
           LA P+S  RR  +      P P   P +GGGGG S        L+ R R  D   E +  
Sbjct: 87  LAAPSSAERRHGEA-----PAPRPAPPQGGGGG-SAGGLSQEELRARQRVVDAAREAQAR 140

Query: 318 RHLEEMVTNCVXRV-------EAAVESVIESAISRIPEVVTKAITCYLSRAPSLCKPLGD 476
           +  E+       R        EAA ++  E A +  P  V +A       AP    P   
Sbjct: 141 QVAEQAAAEARARAAQEAAQREAAAKAAAERA-AAAPPPVAQAPAAPAPAAPVTPPPAAP 199

Query: 477 QNQPPRYKLKFLNGLSNEILPRRES-AXXMGILSRY---AWRRTSNRKTTLWRPSCRQDQ 644
           Q   P  +         +  PR+++ A   G    Y     RR     TT +RP+ + D+
Sbjct: 200 QAPRPVAQAPVAPSAPRQDAPRQDTRAAAPGQTRTYEPSRDRRDDRPSTTTYRPAPQGDR 259



>PM0057 PM0057  COG3210 [M] Putative hemagglutinin/hemolysin
          Length = 2615

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
 Frame = +3

Query: 198  PPMPAKRPLEGGGGGDSPSPARSPA---------LKKRCRSFDVEIRGFRHLEEMVTNCV 350
            PP+PA +P  G       S  ++PA         L+ R ++   E        E  T  V
Sbjct: 2272 PPIPATQPEGGNDANADSSSQQAPASGSTSEGATLQPRVKASSTESEYETIPFESPTPIV 2331

Query: 351  XRVEAAVESVIESAISRIPEVVTKAIT------CYLSRAPSLCKPLGDQNQPPRYKLK 506
             + E   E   ESA++   E+V+K +T        + +  S  + L DQ QP + K K
Sbjct: 2332 KQGEKEAEQ-RESAVNTETEIVSKPVTERVQQRALVEQPRSFLQKLSDQLQPLKVKHK 2388



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37673090
Number of Sequences: 78847
Number of extensions: 755532
Number of successful extensions: 1867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of query: 300
length of database: 26,228,252
effective HSP length: 49
effective length of query: 250
effective length of database: 22,364,749
effective search space: 5591187250
effective search space used: 5591187250
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)