BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_F05_K09ZS5.seq
(918 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DR0325 DR0325 COG0039 [C] Malate/lactate dehydrogenases 146 6e-35
RV1240 Rv1240 COG0039 [C] Malate/lactate dehydrogenases 135 1e-31
XF1211 XF1211 COG0039 [C] Malate/lactate dehydrogenases 134 2e-31
ML1091 ML1091 COG0039 [C] Malate/lactate dehydrogenases 131 2e-30
CPN1028 CPn1028 COG0039 [C] Malate/lactate dehydrogenases 112 1e-24
CT376 CT376 COG0039 [C] Malate/lactate dehydrogenases 111 2e-24
VC0432 VC0432 COG0039 [C] Malate/lactate dehydrogenases 59 2e-08
CDA7901 CDa7901 COG0039 [C] Malate/lactate dehydrogenases 51 3e-06
CC3655 CC3655 COG0039 [C] Malate/lactate dehydrogenases 49 9e-06
CDA8733 CDa8733 COG0039 [C] Malate/lactate dehydrogenases 49 2e-05
HI1210 HI1210 COG0039 [C] Malate/lactate dehydrogenases 49 2e-05
YKL085W YKL085w COG0039 [C] Malate/lactate dehydrogenases 47 4e-05
AQ_1665 aq_1665 COG0039 [C] Malate/lactate dehydrogenases 46 1e-04
MTH188 MTH188 COG0039 [C] Malate/lactate dehydrogenases 44 4e-04
AQ_1782 aq_1782 COG0039 [C] Malate/lactate dehydrogenases 42 0.001
MJ0490 MJ0490 COG0039 [C] Malate/lactate dehydrogenases 42 0.002
TA0952 Ta0952 COG0039 [C] Malate/lactate dehydrogenases 41 0.003
YDL078C YDL078c COG0039 [C] Malate/lactate dehydrogenases 40 0.004
AF0855 AF0855 COG0039 [C] Malate/lactate dehydrogenases 40 0.006
TVN1097 TVN1097 COG0039 [C] Malate/lactate dehydrogenases 39 0.010
DR2364 DR2364 COG0039 [C] Malate/lactate dehydrogenases 35 0.14
ML0204 ML0204 COG0451 [M] Nucleoside-diphosphate-sugar epimerases 34 0.40
MLR7549 mlr7549 COG0451 [M] Nucleoside-diphosphate-sugar epimer... 33 0.68
CT339 CT339 COG0658 [R] Predicted multitransmembrane, metal-bin... 33 0.68
DRA0222 DRA0222 COG0451 [M] Nucleoside-diphosphate-sugar epimer... 33 0.89
BH2304 BH2304 COG0451 [M] Nucleoside-diphosphate-sugar epimerases 32 1.2
MLL2981 mll2981 COG0451 [M] Nucleoside-diphosphate-sugar epimer... 32 1.5
PA4786 PA4786 COG1028 [Q] Dehydrogenases with different specifi... 32 1.5
RV1348_1 Rv1348_1 COG2375 [P] Siderophore-interacting protein 32 2.0
PH0378 PH0378 COG0451 [M] Nucleoside-diphosphate-sugar epimerases 30 4.4
BS_YTCB BS_ytcB COG0451 [M] Nucleoside-diphosphate-sugar epimer... 30 4.4
SLR1434 slr1434 COG1282 [C] NAD/NADP transhydrogenase beta subu... 30 7.6
HI0086 HI0086 COG0626 [E] Cystathionine beta-lyases/cystathioni... 29 9.9
RV3468C Rv3468c COG0451 [M] Nucleoside-diphosphate-sugar epimer... 29 9.9
>DR0325 DR0325 COG0039 [C] Malate/lactate dehydrogenases
Length = 330
Score = 146 bits (368), Expect = 6e-35
Identities = 81/149 (54%), Positives = 100/149 (66%)
Frame = +2
Query: 59 KEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAA 238
K+P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGQDQPVILQLLEITPALKALNGVVMELRDGA 63
Query: 239 FPLLKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAA 418
FPLL V+ + D + A + A++VG P K GMER D++ N I+K Q AL A A+
Sbjct: 64 FPLLADVITSDDPMVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGEALGAVAS 123
Query: 419 PNCKVLVVANPXNTNALILKEFAPSFPEK 505
N KVLVV NP NTNALI ++ AP K
Sbjct: 124 RNVKVLVVGNPANTNALIAQQNAPDLDPK 152
>RV1240 Rv1240 COG0039 [C] Malate/lactate dehydrogenases
Length = 329
Score = 135 bits (339), Expect = 1e-31
Identities = 73/147 (49%), Positives = 98/147 (66%)
Frame = +2
Query: 65 PMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFP 244
P++V VTGAAGQIGY+L+ +A G +LG D+P+ L +L+IE A +AL+GV MEL D AFP
Sbjct: 5 PLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFP 64
Query: 245 LLKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPN 424
LL GV +D + GV++A++VG P GMER D++ N +I+ AQ AL A AA +
Sbjct: 65 LLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADD 124
Query: 425 CKVLVVANPXNTNALILKEFAPSFPEK 505
+V V NP NTNALI AP P +
Sbjct: 125 VRVGVTGNPANTNALIAMTNAPDIPRE 151
>XF1211 XF1211 COG0039 [C] Malate/lactate dehydrogenases
Length = 335
Score = 134 bits (337), Expect = 2e-31
Identities = 79/151 (52%), Positives = 97/151 (63%), Gaps = 2/151 (1%)
Frame = +2
Query: 59 KEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDI--EFAAEALKGVKMELID 232
K +RV VTGAAGQIGY+L+ IA G M G D+PVIL ML++ E A ALKGV MEL D
Sbjct: 9 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELED 68
Query: 233 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAH 412
AFPLL G+V T + A +VA++VG P GMERKD++ +N I+ AQ +AL
Sbjct: 69 CAFPLLAGMVGTDNPDIAFKDADVALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKV 128
Query: 413 AAPNCKVLVVANPXNTNALILKEFAPSFPEK 505
A + KVLVV NP NTNA I + AP K
Sbjct: 129 ARRDVKVLVVGNPANTNAYIAMKSAPDLNPK 159
>ML1091 ML1091 COG0039 [C] Malate/lactate dehydrogenases
Length = 329
Score = 131 bits (329), Expect = 2e-30
Identities = 73/147 (49%), Positives = 96/147 (64%)
Frame = +2
Query: 65 PMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFP 244
P++V VTGAAGQIGY+L+ +A G +LG D+P+ L +L+IE A +AL+GV MEL D AF
Sbjct: 5 PLKVAVTGAAGQIGYSLLFRLASGSLLGLDRPIELRLLEIEPALKALEGVVMELDDCAFL 64
Query: 245 LLKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPN 424
LL GV D + GVN+A++VG P GMER D++ N +I+ AQ AL A AA +
Sbjct: 65 LLAGVEIGADPNKVFDGVNLALLVGARPRGPGMERGDLLEANGAIFTAQGKALNAVAAAD 124
Query: 425 CKVLVVANPXNTNALILKEFAPSFPEK 505
+V V NP NTNALI AP P +
Sbjct: 125 IRVGVTGNPANTNALIAMTNAPDIPRE 151
>CPN1028 CPn1028 COG0039 [C] Malate/lactate dehydrogenases
Length = 328
Score = 112 bits (279), Expect = 1e-24
Identities = 61/151 (40%), Positives = 85/151 (55%)
Frame = +2
Query: 53 AAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELID 232
A KE +RV VTG GQI Y + +A G + G D+ V L + D+ AL GV+MEL D
Sbjct: 2 AFKEVVRVAVTGGKGQIAYNFLFALAHGDVFGVDRGVDLRIYDVPGTERALSGVRMELDD 61
Query: 233 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAH 412
A+PLL + TT + +A G++ A ++G P GMER D++ +N I+ Q +AL
Sbjct: 62 GAYPLLHRLRVTTSLNDAFDGIDAAFLIGAVPRGPGMERGDLLKQNGQIFSLQGAALNTA 121
Query: 413 AAPNCKVLVVANPXNTNALILKEFAPSFPEK 505
A + K+ VV NP NTN I + AP K
Sbjct: 122 AKRDAKIFVVGNPVNTNCWIAMKHAPRLHRK 152
>CT376 CT376 COG0039 [C] Malate/lactate dehydrogenases
Length = 326
Score = 111 bits (277), Expect = 2e-24
Identities = 60/148 (40%), Positives = 82/148 (54%)
Frame = +2
Query: 62 EPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAF 241
+ + V VTG GQI Y+ + +A G + G D + L + DI AL GV+MEL D AF
Sbjct: 4 QTVSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAF 63
Query: 242 PLLKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAP 421
PLL+ V TT + +A G++ A ++G P GMER+D++ KN I+ Q AL A
Sbjct: 64 PLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGMERRDLLKKNGEIFATQGKALNTTAKR 123
Query: 422 NCKVLVVANPXNTNALILKEFAPSFPEK 505
+ K+ VV NP NTN I AP K
Sbjct: 124 DAKIFVVGNPVNTNCWIAMNHAPRLLRK 151
>VC0432 VC0432 COG0039 [C] Malate/lactate dehydrogenases
Length = 353
Score = 58.5 bits (140), Expect = 2e-08
Identities = 46/138 (33%), Positives = 62/138 (44%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL 247
M+V V GAAG IG AL ++ + G+D L + DI A GV +L P+
Sbjct: 43 MKVAVIGAAGGIGQALALLLKNRLPAGSD----LALYDI---APVTPGVAADLSHIPTPV 95
Query: 248 LKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNC 427
A D A G +V ++ G K GM+R D+ N I KA A + A P
Sbjct: 96 TIKGYAGEDPTPALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAEKI-AVVCPKA 154
Query: 428 KVLVVANPXNTNALILKE 481
V ++ NP NT I E
Sbjct: 155 CVGIITNPVNTTVPIAAE 172
>CDA7901 CDa7901 COG0039 [C] Malate/lactate dehydrogenases
Length = 332
Score = 50.8 bits (120), Expect = 3e-06
Identities = 46/144 (31%), Positives = 65/144 (44%), Gaps = 1/144 (0%)
Frame = +2
Query: 53 AAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVI-LHMLDIEFAAEALKGVKMELI 229
+A +V V GA G IG L ++L + V L + DI A V
Sbjct: 13 SASNAYKVAVLGAGGGIGQPL------SLLLKLNHKVTDLALYDIRGAPGVAADVSHVPT 66
Query: 230 DAAFPLLKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEA 409
++ +KG + EA TG +V V+ G P K GM R D+ N SI + A A A
Sbjct: 67 NST---VKGY-NPDQIEEALTGSDVIVIPAGVPRKPGMTRDDLFNTNASIVRDLAKAA-A 121
Query: 410 HAAPNCKVLVVANPXNTNALILKE 481
APN V +++NP N+ I+ E
Sbjct: 122 DYAPNAAVCIISNPVNSTVPIVAE 145
>CC3655 CC3655 COG0039 [C] Malate/lactate dehydrogenases
Length = 320
Score = 49.3 bits (116), Expect = 9e-06
Identities = 41/143 (28%), Positives = 66/143 (45%), Gaps = 5/143 (3%)
Frame = +2
Query: 92 AGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL-----LKG 256
AG IG L + AR + VIL + A +G +++ +A+ LKG
Sbjct: 11 AGMIGGTLAHIAAREEL----GDVIL----FDIAEGTPQGKALDIAEASAVFGKDVALKG 62
Query: 257 VVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNCKVL 436
D+ G +V ++ G P K GM R D++ N+ + KA ++AH APN V+
Sbjct: 63 ANDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAH-APNAFVI 117
Query: 437 VVANPXNTNALILKEFAPSFPEK 505
+ NP + L++F+ EK
Sbjct: 118 CITNPLDAMVWALQQFSGLPKEK 140
>CDA8733 CDa8733 COG0039 [C] Malate/lactate dehydrogenases
Length = 337
Score = 48.5 bits (114), Expect = 2e-05
Identities = 36/138 (26%), Positives = 65/138 (47%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL 247
++V + GAAG IG L + + D+ + ++++ L + + ++ L
Sbjct: 2 VKVAILGAAGGIGQPL--SLLTKLNPNVDELALFDVVNVPGVGADLSHINSDSKTQSY-L 58
Query: 248 LKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNC 427
K T + A G ++ ++ G P K GM R D+ N SI + A + A++ P
Sbjct: 59 PKDKEDKTALAAALKGSDLVIIPAGVPRKPGMTRDDLFNINASIVQGLAEGIAANS-PKA 117
Query: 428 KVLVVANPXNTNALILKE 481
VLV++NP N+ I+ E
Sbjct: 118 FVLVISNPVNSTVPIVAE 135
>HI1210 HI1210 COG0039 [C] Malate/lactate dehydrogenases
Length = 311
Score = 48.5 bits (114), Expect = 2e-05
Identities = 40/138 (28%), Positives = 59/138 (41%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL 247
M+V V GAAG IG AL ++ + G D L + DI A GV +++ +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKLQLPAGTD----LSLYDI---APVTPGVAVDVSHIPTAV 53
Query: 248 LKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNC 427
+ D A G +V ++ G K GM+R D+ N I + + A P
Sbjct: 54 NVKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKV-AVTCPKA 112
Query: 428 KVLVVANPXNTNALILKE 481
V ++ NP NT I E
Sbjct: 113 CVGIITNPVNTTVAIAAE 130
>YKL085W YKL085w COG0039 [C] Malate/lactate dehydrogenases
Length = 334
Score = 47.4 bits (111), Expect = 4e-05
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Frame = +2
Query: 65 PMRVLVTGAAGQIGYALVPMIARGVMLGADQPVI-LHMLDIEFAAEALKGVKMELIDAAF 241
P +V V GA G IG L ++L + V L + D++ A KGV +L
Sbjct: 17 PYKVTVLGAGGGIGQPL------SLLLKLNHKVTDLRLYDLKGA----KGVATDLSHIPT 66
Query: 242 -PLLKGVVATTD--VVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAH 412
++KG + A ++ ++ G P K GM R D+ N SI + A+A A
Sbjct: 67 NSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVRDLAAAT-AE 125
Query: 413 AAPNCKVLVVANPXNTNALILKE 481
+APN +LV++NP N+ I+ +
Sbjct: 126 SAPNAAILVISNPVNSTVPIVAQ 148
>AQ_1665 aq_1665 COG0039 [C] Malate/lactate dehydrogenases
Length = 334
Score = 45.8 bits (107), Expect = 1e-04
Identities = 22/71 (30%), Positives = 42/71 (58%)
Frame = +2
Query: 248 LKGVVATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNC 427
+KG+ + E G ++ V+ G P +EGM R+D++ +N+ I K A++ +A +
Sbjct: 73 VKGISYDKEGFEELKGSDIVVITAGIPRREGMSREDLLYENLKILKKFTDAIKEYAKDSI 132
Query: 428 KVLVVANPXNT 460
++VV+NP +T
Sbjct: 133 -IIVVSNPVDT 142
>MTH188 MTH188 COG0039 [C] Malate/lactate dehydrogenases
Length = 325
Score = 43.9 bits (102), Expect = 4e-04
Identities = 37/149 (24%), Positives = 66/149 (43%), Gaps = 3/149 (2%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL 247
M+V + G+ G++G A +A + LH++ + + E G +++ DA
Sbjct: 1 MKVSIIGSTGRVGRATALCLAE-----EEAVKTLHLISRKESLEQNLGEVLDMSDAL--A 53
Query: 248 LKGV---VATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAA 418
KGV + + +E G + V+ G P M+R D+ KN I A + A A
Sbjct: 54 AKGVSVKLENSADIENVYGSRIVVITAGVPRTADMDRDDLAFKNGRIVADYARQI-ARFA 112
Query: 419 PNCKVLVVANPXNTNALILKEFAPSFPEK 505
P+ +LVV NP + + ++ P +
Sbjct: 113 PDSIILVVTNPVDVMTYVALRYSGFHPSR 141
>AQ_1782 aq_1782 COG0039 [C] Malate/lactate dehydrogenases
Length = 335
Score = 42.0 bits (97), Expect = 0.001
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 281 EACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNCKVLVVANP 451
E G ++ V+ GFP + GM R+D++ N+ I A ++ + AP+ V+VV NP
Sbjct: 81 EPLEGSDIVVITAGFPRRPGMSREDLLEANIRIISVIADRIKRY-APDAIVIVVTNP 136
>MJ0490 MJ0490 COG0039 [C] Malate/lactate dehydrogenases
Length = 313
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/131 (23%), Positives = 59/131 (44%), Gaps = 3/131 (2%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL 247
M+V + GA+G++G A ++A+ + L ++ E + L+G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGT 55
Query: 248 LKGV---VATTDVVEACTGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAA 418
V + + + +V ++ G P KEGM R D+ N I A +
Sbjct: 56 RSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC- 114
Query: 419 PNCKVLVVANP 451
+ K+ V+ NP
Sbjct: 115 -DTKIFVITNP 124
>TA0952 Ta0952 COG0039 [C] Malate/lactate dehydrogenases
Length = 325
Score = 40.8 bits (94), Expect = 0.003
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +2
Query: 293 GVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNCKVLVVANPXNTNALI 472
G +V V+ G K GM R D+ KNV I + ++ ++ P+ ++VV+NP + A
Sbjct: 76 GSDVIVVTAGLARKPGMSRDDLFDKNVEIISDVSRNIKKYS-PDSIIVVVSNPADIMAYA 134
Query: 473 LKEFAPSFPEK 505
L++F P K
Sbjct: 135 LQKFTGIDPSK 145
>YDL078C YDL078c COG0039 [C] Malate/lactate dehydrogenases
Length = 343
Score = 40.4 bits (93), Expect = 0.004
Identities = 19/57 (33%), Positives = 32/57 (55%)
Frame = +2
Query: 290 TGVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNCKVLVVANPXNT 460
+ V ++ G P K G+ R D+ N I K+ +A+ APN ++LV++NP N+
Sbjct: 67 SNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAV-GKFAPNARILVISNPVNS 122
>AF0855 AF0855 COG0039 [C] Malate/lactate dehydrogenases
Length = 294
Score = 40.0 bits (92), Expect = 0.006
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +2
Query: 182 IEFAAEALKGVKMELIDAAFPLLK--GVVATTDVVEACTGVNVAVMVGGFPXKEGMERKD 355
++ A + G M+L AA + K +V D G + V+ G K GM R D
Sbjct: 31 VDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGLARKPGMTRLD 89
Query: 356 VMTKNVSIYKAQASALEAHAAPNCKVLVVANPXNTNALIL 475
+ KN I K A + +A P K+LVV NP + I+
Sbjct: 90 LAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIM 128
>TVN1097 TVN1097 COG0039 [C] Malate/lactate dehydrogenases
Length = 325
Score = 39.3 bits (90), Expect = 0.010
Identities = 21/71 (29%), Positives = 40/71 (55%)
Frame = +2
Query: 293 GVNVAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNCKVLVVANPXNTNALI 472
G +V V+ G K GM R+D+ KNV I + ++ + +P+ ++VV+NP + A
Sbjct: 76 GSDVIVVTAGMARKPGMSREDLFDKNVEIIADVSKNIKKY-SPDSIIVVVSNPADIMAYA 134
Query: 473 LKEFAPSFPEK 505
L++ + P++
Sbjct: 135 LQKISGVDPQR 145
>DR2364 DR2364 COG0039 [C] Malate/lactate dehydrogenases
Length = 304
Score = 35.4 bits (80), Expect = 0.14
Identities = 19/66 (28%), Positives = 32/66 (47%)
Frame = +2
Query: 302 VAVMVGGFPXKEGMERKDVMTKNVSIYKAQASALEAHAAPNCKVLVVANPXNTNALILKE 481
V ++ G K G R D++ KN I++ + AAP+ +LV +NP + + +
Sbjct: 70 VVILTAGANQKPGESRLDLLEKNADIFRELVPQI-TRAAPDAVLLVTSNPVDLLTDLATQ 128
Query: 482 FAPSFP 499
AP P
Sbjct: 129 LAPGQP 134
>ML0204 ML0204 COG0451 [M] Nucleoside-diphosphate-sugar epimerases
Length = 319
Score = 33.9 bits (76), Expect = 0.40
Identities = 25/62 (40%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Frame = +2
Query: 62 EPMRVLVTGAAGQIGYALVP-MIARG-VMLGADQPVILHMLDIEFAAE--ALKGVKMELI 229
EP+R LVTGAAG IG LV ++A G ++G D H ++E A AL V+ +++
Sbjct: 4 EPVRALVTGAAGFIGSTLVDRLLADGHTVVGLDNFATGHAANLEHLASTPALAFVEADIV 63
Query: 230 DA 235
A
Sbjct: 64 TA 65
>MLR7549 mlr7549 COG0451 [M] Nucleoside-diphosphate-sugar
epimerases
Length = 342
Score = 33.1 bits (74), Expect = 0.68
Identities = 23/81 (28%), Positives = 44/81 (53%), Gaps = 7/81 (8%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELI------ 229
M+VLVTGAAG IGY +AR ++ D+ V + ++ ++ +K ++ L+
Sbjct: 1 MKVLVTGAAGFIGY----HVARRLLERGDEVVGIDSVN-DYYDPRIKQARLRLLAEASRG 55
Query: 230 -DAAFPLLKGVVATTDVVEAC 289
+A + + G +A ++V+ C
Sbjct: 56 SNAGYHFIHGNLAEREIVDGC 76
>CT339 CT339 COG0658 [R] Predicted multitransmembrane,
metal-binding protein
Length = 509
Score = 33.1 bits (74), Expect = 0.68
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 593 NLFFCVYPPSNQHPSSCPPLSFPILFVMMSFPLTSFYYLLG--STWGVLFLTVP 748
++ FC+ P S H SS L +F + FP++S +L +T G+LF VP
Sbjct: 309 SILFCLAPFSIGHCSSLNRLGISFIFCSLFFPISSPALILSFLATLGILFFFVP 362
>DRA0222 DRA0222 COG0451 [M] Nucleoside-diphosphate-sugar
epimerases
Length = 288
Score = 32.7 bits (73), Expect = 0.89
Identities = 27/91 (29%), Positives = 45/91 (48%)
Frame = +2
Query: 65 PMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFP 244
P R+L+TGAAG++G AL ++ RG LG P+I + D A G ++ L D
Sbjct: 3 PHRLLITGAAGEVGSALRELL-RG-PLGQHFPII-RLTDNRDLGAARPGEEVMLAD---- 55
Query: 245 LLKGVVATTDVVEACTGVNVAVMVGGFPXKE 337
+ V++ GV+ + + G P ++
Sbjct: 56 ----LTDFNAVLKVMQGVDAVIHLAGIPDED 82
>BH2304 BH2304 COG0451 [M] Nucleoside-diphosphate-sugar epimerases
Length = 315
Score = 32.3 bits (72), Expect = 1.2
Identities = 34/122 (27%), Positives = 51/122 (40%), Gaps = 6/122 (4%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYAL---VPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAA 238
MR+LVTGAAG IG L + M + ++G D + D + V+ L
Sbjct: 1 MRILVTGAAGFIGSHLCEQLLMNEKVSVVGVDGHI-----DSSLCKVKERNVRNLLKHPR 55
Query: 239 FPLLKGVVATTDVVEACTGVNVAVMVGGFP---XKEGMERKDVMTKNVSIYKAQASALEA 409
F LLK + T D+ V+V + G P G + K +T N+ + A
Sbjct: 56 FTLLKQDLLTIDLEPLVDQVDVIYHLSGIPGVRSSWGTDFKKYVTHNIVATQQLLEACRR 115
Query: 410 HA 415
H+
Sbjct: 116 HS 117
>MLL2981 mll2981 COG0451 [M] Nucleoside-diphosphate-sugar
epimerases
Length = 325
Score = 32.0 bits (71), Expect = 1.5
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDI-EFAAEALKGVKM 220
MR+L+TGAAG +G L+ +A+ L L + DI A A++GV +
Sbjct: 1 MRILITGAAGMVGRKLIARLAKDGTLRGKAITALDLHDIVSPQAPAMEGVSI 52
>PA4786 PA4786 COG1028 [Q] Dehydrogenases with different
specificities (related to shor
Length = 451
Score = 32.0 bits (71), Expect = 1.5
Identities = 32/86 (37%), Positives = 44/86 (50%), Gaps = 2/86 (2%)
Frame = +2
Query: 71 RVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL- 247
R LVTGAA IG A+ +AR GA+ + +LD+ A EAL+G+ L A L
Sbjct: 216 RALVTGAARGIGAAIAETLARD---GAE----VVLLDVPPAREALEGLAARLGGRAVALD 268
Query: 248 LKGVVATTDVVEAC-TGVNVAVMVGG 322
+ A +VEA GV++ V G
Sbjct: 269 ICAADAGQQLVEALPEGVDIVVHNAG 294
>RV1348_1 Rv1348_1 COG2375 [P] Siderophore-interacting protein
Length = 430
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Frame = +2
Query: 62 EPMRVLVTGAAGQ----IGYALVPMIARGVMLGADQPVILHMLDIEFA 193
E R+LV+GA +G+A V ++ G +L A + LH++D FA
Sbjct: 316 ELSRLLVSGAGAHRLFTVGFAAVGLLGTGALLAAALTLWLHVIDARFA 363
>PH0378 PH0378 COG0451 [M] Nucleoside-diphosphate-sugar epimerases
Length = 318
Score = 30.4 bits (67), Expect = 4.4
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIEFAAEALKGVKMELIDAAFPL 247
MRVLVTG AG IG LV + ++ + +LD + +A +LK ++ L + F
Sbjct: 1 MRVLVTGGAGFIGSHLVDRL-------MEEGYKVRVLD-DLSAGSLKNIEGWLGNENFEF 52
Query: 248 LKGVVATTDVV 280
+KG + ++V
Sbjct: 53 IKGDMRDVEIV 63
>BS_YTCB BS_ytcB COG0451 [M] Nucleoside-diphosphate-sugar
epimerases
Length = 316
Score = 30.4 bits (67), Expect = 4.4
Identities = 25/90 (27%), Positives = 41/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 68 MRVLVTGAAGQIGYALVPMIARGV---MLGADQPVILHMLDIEFAAEALKGVKMELIDAA 238
M++LVTGAAG IG L + + ++G D + ++ LK +K L +
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLK-----LKNLKNLLPEKR 55
Query: 239 FPLLKGVVATTDVVEACTGVNVAVMVGGFP 328
F +K + T D+ GV+V + P
Sbjct: 56 FTFIKENLLTADLASLLEGVDVIFHLAAIP 85
>SLR1434 slr1434 COG1282 [C] NAD/NADP transhydrogenase beta subunit
Length = 480
Score = 29.6 bits (65), Expect = 7.6
Identities = 24/89 (26%), Positives = 42/89 (46%), Gaps = 5/89 (5%)
Frame = +2
Query: 74 VLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLD-----IEFAAEALKGVKMELIDAA 238
+++T AG +G LV I GAD PV++ ML+ AA + + +I A
Sbjct: 191 LIMTAIAGVLGLHLVAAIG-----GADMPVVISMLNSYSGWAAAAAGFMLSNDLLIITGA 245
Query: 239 FPLLKGVVATTDVVEACTGVNVAVMVGGF 325
G + + + +A ++V++GGF
Sbjct: 246 LVGSSGAILSYIMCKAMNRSFISVILGGF 274
>HI0086 HI0086 COG0626 [E] Cystathionine beta-lyases/cystathionine
gamma-synthases
Length = 381
Score = 29.3 bits (64), Expect = 9.9
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Frame = +2
Query: 215 KMELIDAAFPLLKGVVATTDVVEACTG-----VNVAVMVGGFPXKEGMERKDVMTKNVSI 379
K+E D F G+ A ++ T V+ V G + + + + K V +
Sbjct: 77 KLENGDRGFAFSSGMAAIQVLMTLFTAPDEWIVSSDVYGGTYRLLDFSYKNNNSVKPVYV 136
Query: 380 YKAQASALEAHAAPNCKVLVVANPXN 457
A ASA+EA PN K + + P N
Sbjct: 137 NTASASAIEAAINPNTKAIFIETPSN 162
>RV3468C Rv3468c COG0451 [M] Nucleoside-diphosphate-sugar
epimerases
Length = 364
Score = 29.3 bits (64), Expect = 9.9
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 53 AAKEPMRVLVTGAAGQIGYALVPMI-ARG 136
AA+ MR LVTG++G +G ALV + ARG
Sbjct: 31 AAESGMRTLVTGSSGHLGEALVRTLRARG 59
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36317473
Number of Sequences: 78847
Number of extensions: 652232
Number of successful extensions: 1945
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of query: 306
length of database: 26,228,252
effective HSP length: 49
effective length of query: 256
effective length of database: 22,364,749
effective search space: 5725375744
effective search space used: 5725375744
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)