BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_F06_K11ZS5.seq
         (916 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PA2177_2 PA2177_2  COG0642 [T] Sensory transduction histidine ki...    29  9.8

>PA2177_2 PA2177_2  COG0642 [T] Sensory transduction histidine
           kinases
          Length = 260

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/66 (28%), Positives = 30/66 (44%), Gaps = 5/66 (7%)
 Frame = -3

Query: 431 RRAAAP*WR-----QGSGEAASLM*GRQDEVRRKTSHR*RPGARATTACWI*VAGATPEP 267
           RRA  P +      +G+G   S++ G  +++  + +   +PG   T   WI     TPE 
Sbjct: 180 RRAVEPFYTTKGIGRGTGLGLSIVDGLAEQLGGRLTLESQPGVGTTANIWIPAVPRTPES 239

Query: 266 RRRGAG 249
            R G G
Sbjct: 240 ARTGNG 245



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38148368
Number of Sequences: 78847
Number of extensions: 757400
Number of successful extensions: 1927
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of query: 305
length of database: 26,228,252
effective HSP length: 49
effective length of query: 255
effective length of database: 22,364,749
effective search space: 5703010995
effective search space used: 5703010995
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)