BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_F07_K13ZS5.seq
         (942 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BS_SPOVC BS_spoVC  COG0193 [J] Peptidyl-tRNA hydrolase                 31  2.7
AF1032 AF1032  COG0419 [L] ATPase involved in DNA repair               30  4.6
DR1449 DR1449  COG1346 [M] Putative effector of murein hydrolase       30  7.8

>BS_SPOVC BS_spoVC  COG0193 [J] Peptidyl-tRNA hydrolase
          Length = 188

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 4/67 (5%)
 Frame = -2

Query: 833 KGGEGGRQGMESKLYHLGM*SYE*IAIAFGISEVRGV*LID----NKQRREGPRQAGLIE 666
           KG  GG  G++S + HLG   ++ I I  G   V G+ ++D    +  + E P     ++
Sbjct: 105 KGSAGGHNGIKSLIQHLGTSEFDRIRIGIG-RPVNGMKVVDYVLGSFTKEEAPEIEEAVD 163

Query: 665 RKQVACK 645
           +   AC+
Sbjct: 164 KSVKACE 170



>AF1032 AF1032  COG0419 [L] ATPase involved in DNA repair
          Length = 886

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/92 (26%), Positives = 44/92 (47%)
 Frame = +2

Query: 86  RLLAPSRLMRSRQLSTKVSGERSQVAERHLLEPGSLMRSRQLSGDHARNIQKKEDDCWAG 265
           +L+A    +++R    K + E  + AER     G     R+L  +H +NI  +       
Sbjct: 408 KLIAKKSSLKTRGAQLKKAVEELKSAERTCPVCG-----RELDEEHRKNIMAEYTREMKR 462

Query: 266 FNETLKRLDELQKKKKPSVFQQRMISIDRALK 361
             E L + DE++KK K     +R+  +++AL+
Sbjct: 463 IAEELAKADEIEKKLK-----ERLEKVEKALE 489



>DR1449 DR1449  COG1346 [M] Putative effector of murein hydrolase
          Length = 223

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = +1

Query: 199 LPPALRRSCSQHPEERG*LLGGVQ*DAKEVGRASKKEETKCLSAAHDI 342
           LPP L R   +HP  RG  +G V   A  VG A  +EE     AA  I
Sbjct: 157 LPPLLTRLGVRHPLARGIAIGSV---AHGVGTARAREEGSITGAASSI 201



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35736804
Number of Sequences: 78847
Number of extensions: 645161
Number of successful extensions: 1694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of query: 314
length of database: 26,228,252
effective HSP length: 49
effective length of query: 264
effective length of database: 22,364,749
effective search space: 5904293736
effective search space used: 5904293736
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)