BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_F08_K15ZS5.seq
         (919 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CJ1394 Cj1394  COG0015 [F] Adenylosuccinate lyase                      32  2.0
CT745 CT745  COG1232 [H] Protoporphyrinogen oxidase                    29  9.9

>CJ1394 Cj1394  COG0015 [F] Adenylosuccinate lyase
          Length = 455

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 15/45 (33%), Positives = 23/45 (50%)
 Frame = +1

Query: 310 KAMQQELNELHERYSEISLNFPEVESEKHPLVMTERTLKKPIKQN 444
           KA  +   + H ++ ++   F E +  KHPLV T R L+K    N
Sbjct: 54  KAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNN 98



>CT745 CT745  COG1232 [H] Protoporphyrinogen oxidase
          Length = 424

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 337 LHERYSEISLNFPEVESEKHPLVMTERTLKKPIKQNPEASY--YPLLHKIHTPHNLSPPH 510
           LH+R+  + L+  E ES    L++TE+     +   P+     +   H +H   +L    
Sbjct: 20  LHKRFPHVQLSILEKESRSGGLIVTEKQQGFSLNMGPKGFVLAHDGQHTLHLIQSLGLAD 79

Query: 511 PLQFPTSSLKSTHIH 555
            L + +   K+  IH
Sbjct: 80  ELLYSSPEAKNRFIH 94



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31755233
Number of Sequences: 78847
Number of extensions: 515119
Number of successful extensions: 1429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of query: 306
length of database: 26,228,252
effective HSP length: 49
effective length of query: 256
effective length of database: 22,364,749
effective search space: 5725375744
effective search space used: 5725375744
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)