BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_G02_M03ZS5.seq
         (909 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NMA0937_2 NMA0937_2  COG0072 [J] Phenylalanyl-tRNA synthetase be...    30  5.7
CC3032 CC3032  COG2195 [E] Di- and tripeptidases                       29  9.8

>NMA0937_2 NMA0937_2  COG0072 [J] Phenylalanyl-tRNA synthetase beta
           subunit
          Length = 642

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/51 (35%), Positives = 25/51 (48%)
 Frame = -2

Query: 743 EFLPQNLPVPXLRLSPFRVSQXFGKGGWGRAL*AKRPGGKRGSAPSGLKWG 591
           E L  NL     R+  F +++ FGKG  GR +  +R GG    A    +WG
Sbjct: 408 EILQNNLNRKQNRVRVFEIARVFGKGSDGRFVQNERIGGLWYGAAMPEQWG 458



>CC3032 CC3032  COG2195 [E] Di- and tripeptidases
          Length = 412

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -1

Query: 792 RPSGXKKRAKLTKNLXGIFTTKFTGSQXAPFPIQGVAXFWERGMGAGPLGKTP 634
           R     + AKL + L GIF     G   A     G   +  + +G  P G TP
Sbjct: 277 RSESAAELAKLDQTLIGIFDKAVAGENAARSTKNGAVSYQAKVIGERPAGATP 329



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36408433
Number of Sequences: 78847
Number of extensions: 691810
Number of successful extensions: 1452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of query: 303
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)