BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_G04_M07ZS5.seq
         (909 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RV0958 Rv0958  COG1239 [H] Mg-chelatase subunit ChlI                   31  3.4

>RV0958 Rv0958  COG1239 [H] Mg-chelatase subunit ChlI
          Length = 459

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 627 VGEDPXVVVAV--SLIGVHGFAALLGEVGQGRARLLVPLEQPLDIAVPMV 484
           +G D  V+  V  +LI  H F  LLGE GQG+ RLL  L   LD   P++
Sbjct: 46  LGFDDTVIPQVERALIAGHDFV-LLGERGQGKTRLLRALAGLLDEWTPVI 94



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23394089
Number of Sequences: 78847
Number of extensions: 324544
Number of successful extensions: 1258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of query: 303
length of database: 26,228,252
effective HSP length: 49
effective length of query: 253
effective length of database: 22,364,749
effective search space: 5658281497
effective search space used: 5658281497
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)