BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_G10_M19ZS5.seq
         (916 letters)

Database: COGs
           78,847 sequences; 26,228,252 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CDA2524 CDa2524  COG1077 [D] HSP70 class molecular chaperones in...    32  1.2
RV1259 Rv1259  COG1573 [L] Uracil-DNA glycosylase                      31  2.6
CC0464 CC0464  COG0441 [J] Threonyl-tRNA synthetase                    30  5.8
DR0693 DR0693  COG0004 [P] Ammonia permeases                           30  7.5
MTH528 MTH528  COG2068 [R] Uncharacterized MobA-related protein        30  7.5
CC1337 CC1337  COG0652 [O] Peptidyl-prolyl cis-trans isomerase (...    29  9.8

>CDA2524 CDa2524  COG1077 [D] HSP70 class molecular chaperones
           involved in cell morphogen
          Length = 1014

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/87 (25%), Positives = 36/87 (41%)
 Frame = -2

Query: 573 PHPNTDLTVRGTDKPQTDHSLYNLRDACDPASRLYLPKHRSHPA*SGGVPGH*ENARRRT 394
           P   T+    GT    T ++  N  +A    +        S  +  GGV G  E++ ++ 
Sbjct: 43  PESPTNPNATGTSSSTTTNTATNKINAGGATTTSTTKSSSSSSSSGGGVIGDSESSAQKR 102

Query: 393 PAPSPHGARTAAAESKQRTGAGRVARA 313
             P P   +  +AE+ QR   GR+  A
Sbjct: 103 HKPGPTAGKRPSAETLQRRKEGRIKAA 129



>RV1259 Rv1259  COG1573 [L] Uracil-DNA glycosylase
          Length = 299

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/39 (48%), Positives = 22/39 (55%)
 Frame = -1

Query: 445 GMKRRRPWALGKRPQAHPCPLPPRGADRSGRVETEDRSG 329
           G KR R   LG  P AH       GA+R+GR+ T DRSG
Sbjct: 123 GSKRPRLLILGLAPAAH-------GANRTGRMFTGDRSG 154



>CC0464 CC0464  COG0441 [J] Threonyl-tRNA synthetase
          Length = 655

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 693 KLTPNAQAGQRKLNYTIQRRPATNSLLRHTTA-TLSKARPAPHPNTDLTV 547
           +LTP+   G+RK     +  P     +RH TA  L++A     P T +T+
Sbjct: 50  RLTPDLLTGERKFEILTREAPEALDTIRHDTAHVLAEAVQELFPGTQVTI 99



>DR0693 DR0693  COG0004 [P] Ammonia permeases
          Length = 439

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 552 LGPYLGVALASLSIVLRLCAGVESWWRVFFGWCNLTSFVRPARLGSILARVAGDFHTWPG 731
           LG     ALA ++ ++   A + +W     GW +L+S  +P  +G+    V G     P 
Sbjct: 248 LGANQTAALAFITTLIAPAAAMLTW----LGWESLSS--KPTAVGAATGLVVGLVAITPA 301

Query: 732 CAALSP 749
           CA +SP
Sbjct: 302 CAFVSP 307



>MTH528 MTH528  COG2068 [R] Uncharacterized MobA-related protein
          Length = 221

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 459 AWVGTAGRPGRMHLASCRDYDRFGVCPYHERLGPYLGVALASLSIVLRLCAGVE 620
           A V  AGR  RM     RD    G+ P H+ L P  GV +   ++   L AGV+
Sbjct: 7   AVVAAAGRGSRM----MRDMAELGLEPVHKLLLPLNGVTVIEATVKAVLSAGVD 56



>CC1337 CC1337  COG0652 [O] Peptidyl-prolyl cis-trans isomerase
           (rotamase) - cyclophilin
          Length = 212

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 1/53 (1%)
 Frame = -2

Query: 675 QAGQRKLNYTIQRRPATNSLLRHTTATLSKARPAPHP-NTDLTVRGTDKPQTD 520
           Q   ++L   I   P T + LRH   TLS AR AP   ++D  +   D P  D
Sbjct: 101 QGDPKRLLPPIAHEPTTQTGLRHVDGTLSLARKAPGTGDSDFFICVGDAPYLD 153



  Database: COGs
    Posted date:  Jan 30, 2002  4:01 PM
  Number of letters in database: 26,228,252
  Number of sequences in database:  78,847
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40791994
Number of Sequences: 78847
Number of extensions: 845242
Number of successful extensions: 2138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of query: 305
length of database: 26,228,252
effective HSP length: 49
effective length of query: 255
effective length of database: 22,364,749
effective search space: 5703010995
effective search space used: 5703010995
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)