BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_G12_M23ZS5.seq
(911 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CDA6080 CDa6080 COG0488 [R] ATPase components of ABC transporte... 73 8e-13
YER036C YER036c COG0488 [R] ATPase components of ABC transporte... 72 1e-12
YFR009W YFR009w COG0488 [R] ATPase components of ABC transporte... 37 0.061
CDA7604 CDa7604 COG0488 [R] ATPase components of ABC transporte... 34 0.30
>CDA6080 CDa6080 COG0488 [R] ATPase components of ABC transporters
with duplicated ATPas
Length = 609
Score = 72.8 bits (177), Expect = 8e-13
Identities = 40/80 (50%), Positives = 46/80 (57%)
Frame = +1
Query: 307 LSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSXXXXXXXXXXXXXXXXXCGKSTL 486
LSDR TGVL S SRDI + S+SL FHG LI DS CGKSTL
Sbjct: 63 LSDRVTTGVLESLETSRDIKLSSVSLLFHGKVLIQDSTLELNYGRRYGLLGENGCGKSTL 122
Query: 487 LTAIGCRELPIPEHMDIHHL 546
+ +I RE PIPEH+DI+ L
Sbjct: 123 MKSIAAREFPIPEHIDIYLL 142
>YER036C YER036c COG0488 [R] ATPase components of ABC transporters
with duplicated ATPas
Length = 610
Score = 72.0 bits (175), Expect = 1e-12
Identities = 40/80 (50%), Positives = 46/80 (57%)
Frame = +1
Query: 307 LSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSXXXXXXXXXXXXXXXXXCGKSTL 486
LSDR TGVL+S SRDI + S+SL FHG LI DS CGKST
Sbjct: 64 LSDRVVTGVLSSLETSRDIKLSSVSLLFHGKVLIQDSGLELNYGRRYGLLGENGCGKSTF 123
Query: 487 LTAIGCRELPIPEHMDIHHL 546
L A+ RE PIPEH+DI+ L
Sbjct: 124 LKALATREYPIPEHIDIYLL 143
>YFR009W YFR009w COG0488 [R] ATPase components of ABC transporters
with duplicated ATPas
Length = 752
Score = 36.6 bits (83), Expect = 0.061
Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Frame = +1
Query: 352 SRDIHIESLSLTF-HGHDLIVDSXXXXXXXXXXXXXXXXXCGKSTLLTAIGCRELPIPEH 528
S+DIHI++ L G ++ ++ GKSTLL A+ REL +P+H
Sbjct: 196 SKDIHIDTFDLYVGDGQRILSNAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELNVPKH 255
Query: 529 MDIHHL 546
+ I H+
Sbjct: 256 VSILHV 261
>CDA7604 CDa7604 COG0488 [R] ATPase components of ABC transporters
with duplicated ATPas
Length = 751
Score = 34.3 bits (77), Expect = 0.30
Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Frame = +1
Query: 352 SRDIHIESLSLTF-HGHDLIVDSXXXXXXXXXXXXXXXXXCGKSTLLTAIGCRELPIPEH 528
S+DI I++ L G ++ ++ GKSTLL A+ REL IP+H
Sbjct: 195 SKDIKIDTFDLYVGDGQRILSEASLTLAYGRRYGLVGQNGIGKSTLLRALSRRELNIPKH 254
Query: 529 MDIHHL 546
+ I H+
Sbjct: 255 ISILHV 260
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36813589
Number of Sequences: 78847
Number of extensions: 692996
Number of successful extensions: 1654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of query: 303
length of database: 26,228,252
effective HSP length: 49
effective length of query: 254
effective length of database: 22,364,749
effective search space: 5680646246
effective search space used: 5680646246
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)