BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/home/local/jxu/web/Fgr/NCPvsCOGs/blast/0941_H03_O05ZS5.seq
(896 letters)
Database: COGs
78,847 sequences; 26,228,252 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DR0911 DR0911 COG0086 [K] DNA-directed RNA polymerase beta' sub... 32 1.9
BB0388 BB0388 COG0086 [K] DNA-directed RNA polymerase beta' sub... 30 4.3
MLR0277 mlr0277 COG0086 [K] DNA-directed RNA polymerase beta' s... 30 5.6
PA2727_3 PA2727_3 COG1112 [L] Superfamily I DNA and RNA helicas... 30 7.4
BH1131 BH1131 COG0318 [I] Acyl-CoA synthetases (AMP-forming)/AM... 30 7.4
>DR0911 DR0911 COG0086 [K] DNA-directed RNA polymerase beta'
subunit/160 kD subunit (sp
Length = 1546
Score = 31.6 bits (70), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = +3
Query: 378 RCSGQEPSKIVPVSEGTTFGIVAGDSIATPST 473
+C G + S+ PVS G G+VA +SI P T
Sbjct: 1220 KCYGYDLSQAKPVSMGEAVGVVAAESIGEPGT 1251
>BB0388 BB0388 COG0086 [K] DNA-directed RNA polymerase beta'
subunit/160 kD subunit (sp
Length = 1377
Score = 30.4 bits (67), Expect = 4.3
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = +3
Query: 378 RCSGQEPSKIVPVSEGTTFGIVAGDSIATPST 473
+C G++ SK PV+ G GI+A SI P T
Sbjct: 860 KCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGT 891
>MLR0277 mlr0277 COG0086 [K] DNA-directed RNA polymerase beta'
subunit/160 kD subunit (s
Length = 1398
Score = 30.0 bits (66), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 375 ARCSGQEPSKIVPVSEGTTFGIVAGDSIATPST 473
A C G++ ++ PV++G G++A SI P T
Sbjct: 892 AVCYGRDLARGTPVNQGEAVGVIAAQSIGEPGT 924
>PA2727_3 PA2727_3 COG1112 [L] Superfamily I DNA and RNA helicases
and helicase subunits
Length = 286
Score = 29.6 bits (65), Expect = 7.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 379 RAFEAALWSCATQSAPWRSAARGTVKAPVXXRAPTACSHSRRGRS 245
R + A+ + AT++A WR+ A P +PTAC+ S + R+
Sbjct: 210 RRWSASGYRPATKAARWRNCAPSPPTRPPCKPSPTACAPSAKRRT 254
>BH1131 BH1131 COG0318 [I] Acyl-CoA synthetases
(AMP-forming)/AMP-acid ligases II
Length = 546
Score = 29.6 bits (65), Expect = 7.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 476 VTGVRVHDPVRANQKAHHRALPPQEARATEAGAQAPASPGL 598
+T RV DP+ + R LP E + E G + +PG+
Sbjct: 347 ITQTRVDDPIELRVQTVGRPLPNVEVKIVEPGTEKEVAPGV 387
Database: COGs
Posted date: Jan 30, 2002 4:01 PM
Number of letters in database: 26,228,252
Number of sequences in database: 78,847
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24868310
Number of Sequences: 78847
Number of extensions: 332412
Number of successful extensions: 1097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of query: 298
length of database: 26,228,252
effective HSP length: 49
effective length of query: 249
effective length of database: 22,364,749
effective search space: 5568822501
effective search space used: 5568822501
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)